| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4026 |
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| Symbol | |
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| ID | 5613987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4931825 |
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| End bp | 4933192 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934981 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001475758 |
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| Protein GI | 157377158 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000155639 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000003027 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCAATA ACGGACTCTC AAAGACCGAG AAAAAAGTCG CGTTTTCTTT AGCCAGTGTA
TTTGGTTTGC GCATGATGGG CTTGTTTATG ATCATGCCTG TCTTTGCACT TTACGGGCAG
CATTTAGAAG GCTTTTCACC TTTGTGGGTG GGTATTGCTA TTGGTGCATA TGGTCTCACT
CAGGCCGTAT TACAGATCCC TATGGGGATC TTATCCGATA AGTTCGGCCG AAAGCCGATT
ATTCTTGCGG GCCTGCTGCT GTTTGCATTT GGTAGTCTGG TCGCAGCGAA TGCCGATACC
ATCTATGGGG TGGTCGCGGG TCGTGCGATA CAGGGAATGG GTGCCATTGC CGCTGCTGTG
TTAGCCTTAG CAGCCGATCT GACTCGTGAT GAGCAGCGCA CCAAAGTGAT GGCTATTATC
GGTATGTGTA TCGGATTCTC CTTCGCACTC TCTCTGTTAG TCGGTCCTAT CGTCGCTCAG
CATCTCGGGT TGTCGGGTTT GTTTGCGATG ACGGCGGGTT TAGCTGTCTT GGGTATGCTC
ATCGTGCAAC TGCTCGTGCC TACTCCAATT TCTCAAGCGC CGAAAGGTGA CACGGTTGCT
ACGCCGACTA AATTAAAGGC GATGGTGACT GACCCTCAGC TGTTCAGGCT CGACGCGGGG
ATCTTTATTT TGCATTTAGT ACTGACCGCG GTTTTTGTGG CACTACCATT GGATCTTGTC
GACGCAGGCT TGGTGAAAGA GAAGCACTGG ATGCTTTATT TCCCGGCATT TATGGGCGCG
TTCTTCCTGA TGGTGCCCCT AATCATCATA GGTGTGAAGA AGAAAAATAC TAAGGCGACC
TTCCAGGTTG CTCTACTCCT CATGATGATG GCATTGGGCG CGATGGCACT ATTTGCCAAT
AACCTCATGG TATTAAGTGT TGCGGTAGTC CTGTTTTTTA CCGGATTTAA CTATTTAGAA
GCCTCACTGC CCAGCTTGAT CGCTAAGTTT TGTCCCGTAG GAGATAAAGG CTCGGCGATG
GGAGTCTACT CTACCAGTCA GTTCCTGGGT GCCTTCTGTG GTGGTTTATT AGGCGGTGGT
GCATATCAGT TAGTCGGCGC CGCAGGTGTG TTCGCAGTCG CGTTATTCTT AATGGCTATC
TGGTTAGTGC TGACCTTAGG TATGGAAAAT CCGGTATTGC TTAAGAGCTA TACCCTTGAA
GCTACAGTGG AAGGTCGGGA TCAAGCCAAA GCTATGGCGA CCGAGTTATC TCAGCTTGCA
GGCGTTGCCG AGGCAATTGT CGTGCTCGAG GAGAAAGTCG CATATTTAAA AGTTGATGAG
CATTTCGATT TGAGAGAAGC CCGAGCTGTG TTAGGCTCTG TCAGTTAA
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| Protein sequence | MSNNGLSKTE KKVAFSLASV FGLRMMGLFM IMPVFALYGQ HLEGFSPLWV GIAIGAYGLT
QAVLQIPMGI LSDKFGRKPI ILAGLLLFAF GSLVAANADT IYGVVAGRAI QGMGAIAAAV
LALAADLTRD EQRTKVMAII GMCIGFSFAL SLLVGPIVAQ HLGLSGLFAM TAGLAVLGML
IVQLLVPTPI SQAPKGDTVA TPTKLKAMVT DPQLFRLDAG IFILHLVLTA VFVALPLDLV
DAGLVKEKHW MLYFPAFMGA FFLMVPLIII GVKKKNTKAT FQVALLLMMM ALGAMALFAN
NLMVLSVAVV LFFTGFNYLE ASLPSLIAKF CPVGDKGSAM GVYSTSQFLG AFCGGLLGGG
AYQLVGAAGV FAVALFLMAI WLVLTLGMEN PVLLKSYTLE ATVEGRDQAK AMATELSQLA
GVAEAIVVLE EKVAYLKVDE HFDLREARAV LGSVS
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