| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4025 |
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| Symbol | |
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| ID | 5613986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4930999 |
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| End bp | 4931694 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934980 |
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| Product | single-strand binding protein |
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| Protein accession | YP_001475757 |
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| Protein GI | 157377157 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0629] Single-stranded DNA-binding protein |
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| TIGRFAM ID | [TIGR00621] single stranded DNA-binding protein (ssb) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000941126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000110243 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGCCAGTC GTGGTGTCAA TAAGGTAATT TTGGTCGGTA ACTTAGGGAA AGACCCTGAA
GTTCGTTACA TGCCAAATGG CAATGCCGTA GCCAACTTTA CAGTGGCGAC GAGTGAGTCT
TGGAAAGACC AACAAGGTCA GCCACAAGAG CGTACAGAGT GGCATAATAT CGTTATGTAT
CGTCGCTTAG CAGAAATTGC AGGCGAGTAC CTTAAGAAAG GTTCTAAGGT ATATATCGAA
GGTAAATTGC AAACCAGCAA GTGGCAGGAT CAGTCTACCG GTCAAGATCG CTACAAGACA
GAGATCAATG CTAACGAAAT GCAGATGCTC GATAGCCGTG GTCAAGGTGG CGGACAGCAA
GGTGGCTATG GTCAACAGCA GGGTCAGCAA CAGCAGAACC AGTACAATGC ACCTCAGCAG
CAGGCTCCGC AGCAAGGTTA TGCACCTAAG CCGCAGCAAG CCCCTCAGCA GGCTCCACAG
CAAGGTTATG CACCTAAGCC GCAGCAAGCA CAACAGCAAG CTCCTGCACA GCAATCAGCT
TATGCGCCAA AGCCTCAGCA AGCACCACAG CAAGCACCAC AGCAAGCGGC TCCGCAACAG
CGTCCAGCGC CTCAGCCTCA ACAGCCAGCG CAGCAGCCTC AGCAGAACTT CACTCCTGAC
CTGGATGATG GTTGGGATGA TGATATCCCG TTTTAG
|
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| Protein sequence | MASRGVNKVI LVGNLGKDPE VRYMPNGNAV ANFTVATSES WKDQQGQPQE RTEWHNIVMY
RRLAEIAGEY LKKGSKVYIE GKLQTSKWQD QSTGQDRYKT EINANEMQML DSRGQGGGQQ
GGYGQQQGQQ QQNQYNAPQQ QAPQQGYAPK PQQAPQQAPQ QGYAPKPQQA QQQAPAQQSA
YAPKPQQAPQ QAPQQAAPQQ RPAPQPQQPA QQPQQNFTPD LDDGWDDDIP F
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