| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4024 |
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| Symbol | |
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| ID | 5610830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4928800 |
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| End bp | 4930662 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934979 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475756 |
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| Protein GI | 157377156 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0197214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000330644 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAAAAAAG TAACTAAAAG ATTACTCATC GTGATACCGG CTGTATTAGC TATGGGCATT
TCGACTGCCC ATGCTGAATG GGACGAAGAT AAAGGATGCT TGAGTTGTCA TGAAGGGATT
GAACAATTTT CAGAGATAGA GGAGATGGCC GATCTAACTT GTGTCGATTG TCATAATGGT
GATGGTGCTG CGACAACGTT AGAAGCGGGT CATAAAGAGC TGTGGGTTAA CCCCAGTGAT
CTGAGAGTCA TAGATAAAAC CTGTGGGGAG TGTCACTCGG AAGAGGTGGA AAATGCTAAG
ACATCGATGC ATGCCACGAT GGCAGGCATG ATCTCGGGTA CACGTTATAA TTTCGGTAGC
CAAACCCGAG ATTCGATTCA TGCCACTTAT GATGTTAAAG CGCTAAAAAC CGGTAGAGAG
GGGACAGTTG AAAGCCTGAC TCAGCTTCCT TCTTATGATC CAACCAAAGC CGAATCAGAT
ACTAACTCTC CAGGCGATGA CTACCTGAGA AATCAGTGTC TGCGTTGTCA TATCTGGAGT
GATGGTCATC AAAGAGATGG CGACTATCGC GCATCGGGTT GTGCGGCTTG TCATGTCGAG
TACAGTAATG CCGGTACCTA TGAAGGTGGC GATAAAGCGA TAGATAAAAC GCAAAAAGAT
CGTCCACGTC AACACCGACT CACTAAGAAG ATGACCGTCG ATCAATGCCA ACATTGCCAT
AACCGTGGCG GTCGTACCGG TGTGAGTTAC AAGGGAATGA TGGAGTCAGA TGGCTATGGT
ACTCCCTACA ATGAGGACGG TAGCAAACAG GGTAAGTTGC ACGGTAAGCA CTACAATTTC
CTGCAAGCCG ATCTTCATTA TGATGCCGGG ATGAGCTGTA TCGATTGTCA TATGAAGACA
GAGATGCACG GTGATGGTTA TCTCTATACC AAGAAAGAGC ATGCTGTTGA GGTTCGCTGT
GAGACTTGTC ATGGTACGAC ATCGACCGAT GCTACCTTAA AAACATCTCG TGGTAATCCG
ATGAACAACC TTAAGCGTGA GGGGAAAAAG GTTGTATTGA CCACGAAGAA TGAGGGCAAG
AAATTGAATG TTCCTCAGCT TAATGGTGCG GAACTTTCCG AAGAGGGTTA CGTGGCCATG
GTGAAGATTG CCAGCCATAT GGAGAAGATG GAGTGTTCTA CCTGTCATGC TGCATGGGCA
CCACAATGCT ATGGCTGTCA CGCTAAGCAA GATATCGGTA AGCCCAATGG CGATTGGTTA
GACGGTGAGC ATAGCGATAT TTCACAGCTG GGTAAGAAAG CGAACCTGAA GAAAGAGGCA
TTTAGCTGGA ATGAATCCCG CTCATACGTG CGTTGGGAAA CGCCAGCTCT GGGAATCAAC
CATCGTGGCA AGGTGTCGAC TTTCATTCCG GGTTGTCAGG TGTTCCTGAC TCAGGTTGAT
GGTGAAAAGT CTATCGTGAC CAATAAGACC TATGTGACTA AAGATGGGAC CAGCGGTATC
TCTCACAATC CGATTCAGCC TCATACCATG AGTAAGAAGT CGCGTACCTG TGAAGAGTGT
CATACCAATC CTAAAGTGCT GGGACTGGGC TCAGGGCAAT ACGATATCAA GCGTAACTTC
CCGGATGGTC AGGCACCTAT CAATTTCGAA CTCGAACGCT TCGTCGATGA AAATGGTAAG
CAGCTGCAAT CGACTTCTCA TGAGGAGGCG CGTCCGTTTA ACAAGGAGGA GATGGATCGT
ATCAGTCGTG TGGGGGCATG TTTAGCCTGC CATGGCAGTA AGGAGATCAC GGCGAACGGT
AAGGCGCCGG ACGATGTGAC TCATAAGAAG GTGATCCAAC GAATGGTGGA GAAAGCTCGC
TAG
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| Protein sequence | MKKVTKRLLI VIPAVLAMGI STAHAEWDED KGCLSCHEGI EQFSEIEEMA DLTCVDCHNG
DGAATTLEAG HKELWVNPSD LRVIDKTCGE CHSEEVENAK TSMHATMAGM ISGTRYNFGS
QTRDSIHATY DVKALKTGRE GTVESLTQLP SYDPTKAESD TNSPGDDYLR NQCLRCHIWS
DGHQRDGDYR ASGCAACHVE YSNAGTYEGG DKAIDKTQKD RPRQHRLTKK MTVDQCQHCH
NRGGRTGVSY KGMMESDGYG TPYNEDGSKQ GKLHGKHYNF LQADLHYDAG MSCIDCHMKT
EMHGDGYLYT KKEHAVEVRC ETCHGTTSTD ATLKTSRGNP MNNLKREGKK VVLTTKNEGK
KLNVPQLNGA ELSEEGYVAM VKIASHMEKM ECSTCHAAWA PQCYGCHAKQ DIGKPNGDWL
DGEHSDISQL GKKANLKKEA FSWNESRSYV RWETPALGIN HRGKVSTFIP GCQVFLTQVD
GEKSIVTNKT YVTKDGTSGI SHNPIQPHTM SKKSRTCEEC HTNPKVLGLG SGQYDIKRNF
PDGQAPINFE LERFVDENGK QLQSTSHEEA RPFNKEEMDR ISRVGACLAC HGSKEITANG
KAPDDVTHKK VIQRMVEKAR
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