| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4018 |
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| Symbol | |
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| ID | 5612506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4919430 |
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| End bp | 4922609 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934973 |
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| Product | beta-galactosidase |
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| Protein accession | YP_001475750 |
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| Protein GI | 157377150 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000751059 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGTCAAAAT CCATCACCCT AGTCAGCACT CTACTACTCG GCTTATGCAG TCTCACCTCC
CAAGCAACTG AGCGATGGCA GGATCACTCG GTATTTGAGG TCAATAAAGA GCCTCCACAC
GCCAGCTTCT TCGCCTATGA CTCAATCCTG AAGGCGAGTG CCGACAATTA TCGAAGTAGC
AAAAACTTCA TGGATCTCAA TGGTACATGG CAGTTTCATT ATGCGCCCAA CCCTGCATCA
GTCCCTGTAG ACTTTGCAAA CAACAGCTAT GATCCCACGA ACTGGGGCAG CATTCAGGTT
CCCGGTAACT GGGAGACTCA AGGTTACGGT CATGCCATCT ACCTCGATGA GCGCTACCCC
TTCACCACCA GCTGGCCCGA CGCCCCCCAA GATCATAATC CGACGGGCAG TTATCGACGC
GAATTCACCC AGCCCGAAGA TTGGCAAGGC AAACAGATTT TCTTCCATGT GGGCGCCGCA
AGATCCTCAC TGACTCTATT TGTTAACGGC GCAGAGGTTG GCTATAGCCA GGGTGCTAAG
ACGCCGGCCG AGTTTAATAT TACTCAGTAC CTCAAGCCGG GTAAAAACCT GCTTTCGATG
AAGATAATTC GCTGGAGTGA TGCCAGTTAT CTGGAAAGCC AGGATATGCT TCGAATGAGC
GGCATCGAGC GTGATGTCTA CCTCTTTGCC ACACCTCAAC AGAGGATCAG CGATATTGAT
GCACTCTACA GTCTCAATAA CAAATTAGAT AAGGCCGAAC TGGCATTAAG CTTCAAGCTA
AAAAACCATC AAGCTACAGC GCCAGTCACG GTTGATTACC AATTACTTTC ACCGGCCGGA
GAGTTGGTGG CAAACGGCAG CCAGAGCCTG ATATTGAAGG GGGATAACAG CGTCATTTTC
GAGGATAAGC TGGTATCACC ATTGCTGTGG AGCGCCGAAA CACCAGAGCT CTACCAACTT
ATCGTCAGCA TGAAAGATGA TAAAGGCAAG TTGTTGCAGG CCAGTAGCCA ACATATAGGT
TTTCGTCATA TAGAGATTAA AGCGGGGCAA TTGTTAATCA ATAAGCGGGC CATCACCATC
CGTGGTGTCG ACCGCCATGA AACCGATCCT CTTACCGGTC ATGTCGTCAG CCGTGAGAGC
ATGGAGCGAG ATATCCGCTT GATGAAGTTA AACAACATCA ACGCCGTTCG CTCATCTCAC
TATCCTAACG ATCCATACTG GCTCCAGCTG GCCGACAGAT ACGGCATGTA TATCGTCGAT
GAAGCCAATA TCGAATCTCA TCCCCTCGCC ATCGATGAAA AGACCCAACT CGGTAACGAA
ATGAGTTGGT ATCCGGCCCA TCTGGCCCGC GTCGAGCGCA TGCTTGAACG GGATAAGAAC
CACCCATCGG TGATCATCTG GTCTCTGGGT AACGAGGCCG GCGAAGGAAA ACTGTTTGAA
CAGCTCTATC GGTGGGTCAA ACAGCGCGAT TCCAGTCGTC CGGTTCAGTA TGAACCCGCT
GGCATGGCCG CCTATACCGA TATTGTCGCC CCTATGTATC CCTCCATTGA GCGGATAGAA
ACGTACGCCA AAGCACATAC CGACCGACCA CTGATCATGA TTGAGTATGC CCACGCCATG
GGCAACTCGG TTGGCAACCT TCAGGACTAC TGGGATGTCA TAGAAAAGTA TCCGAACCTG
CAAGGCGGCT TTATCTGGGA CTGGGTGGAT CAATCGCTAA AGTTCACCAA TGAAAAGGGA
GAAGATTATT GGGCATACGG AAAGGATTAC CACCCGGATA TGCCCACAGA CGGTAACTTT
CTCAATAATG GTTTAGTCGA TCCGGACCGA AATCCGCACC CTCACCTGAG TGAAGTAAAG
AAGGTCTATC AAGCCATAGG GTTCGATAAT TTCAAATTCA ATGGCAATTT CGATGACAAT
CTCGATGACA AGAGTGCCAG TATCAGGCTA ACCAACAAAT ATGACTTTCA AAGCACTAAG
GGACTGACGC TGAGCTGGTC GCTGCAAAAA GATGGCATAG CCGTCGCGAG TGGCAGCGAG
CCTATGCCCG TGATAGCGGC CGGTGAAGCT AAATCTGTCA CTATCAAGCT CACAAACAAG
CCAGCGCTTG TATTCGATAG CAGATACGAA TACCGGCTAC TCGTTTCGGT TTCACTGGCG
GAGCCCAGAC CTTTGATCCC CGCAGGTCAT GAGTTGGCAT TTGCACAATA TTTACTGCTG
GAAGCCAGCC CAAACATCTC GCCAGTGAGC ACGGCCACCA GCTTGGCGGA GACTGAGACT
CGATGGCAAC TCAGCCACGG GGATAACCAC TATTCAATAT CCCAAATTTC CGGCTGGTTA
ACCGAGATAG AGATTGATGG TGAACCGCAG ATCCAGGCCC CCTTAATGGC CAACTTCTGG
CGAGCTCCCA CGGATAATGA CTTAGGTAAT GGTATGCCCG ACTGGGGAGG TGTATGGCAA
GATGCCTCGG CTCAACTCAC CCTTGAGTCC ATCGAGCCTC TCGAGGAGCA CGGCCTGATA
GTGACCCATC AGCATCCCAA GTTAGGTATC ACCTTAGTGA CACAATACCG TGTAAATAAG
CGTGGCGAAC TCATGGTTAA CATAAGCTTT AATCCAGGCA AGACCGCCCT TCCGGATCTG
CCCAAGTTTG GCTTTACGAC TCGCCTTCCC TTCGAACAGC GTTACCTGAG TTATTACGGA
CGCGGCCCCG AAGAGACCTA TGCAGACAGA GCTTCAGGTA ATCCTTTCGG TTGGTATCAA
CTGCCGATAG AGAAATTATT TCACCGTTAT TCACGTCCCC AGGAGACCGG GCAGCGAACC
CAGATCAGAT ATGCAGCAGT CAGAAACAGT GCTGGGACCG GTCTGATGGC CGTAGCCCAA
AACGAGATGC AAACCAGTTT ATGGCCCTTT AGTCTGGCTG ATATCGACTT TAGAGAGGGT
GATGCGCAGG GCTCGGCATC GGGCTTAGTC CCGGTGACAC AGAACCATGG CGGTGAGGTC
CCCATTCGTG ATTTTGTCAC CTGGAATATA GACCTGAAAC AGATGGGAGT CGGTGGCGAT
ACCTCATGGG GTCGCCCCGT ACATGACAAG TACAGAATTA AGGCCGAGAA GATGAGTTTC
AAGTTCAGGC TCGTCCCCGT AACGGCGCAG AGCCAACTTC AACAACTGGC CCGAGAGTAA
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| Protein sequence | MSKSITLVST LLLGLCSLTS QATERWQDHS VFEVNKEPPH ASFFAYDSIL KASADNYRSS
KNFMDLNGTW QFHYAPNPAS VPVDFANNSY DPTNWGSIQV PGNWETQGYG HAIYLDERYP
FTTSWPDAPQ DHNPTGSYRR EFTQPEDWQG KQIFFHVGAA RSSLTLFVNG AEVGYSQGAK
TPAEFNITQY LKPGKNLLSM KIIRWSDASY LESQDMLRMS GIERDVYLFA TPQQRISDID
ALYSLNNKLD KAELALSFKL KNHQATAPVT VDYQLLSPAG ELVANGSQSL ILKGDNSVIF
EDKLVSPLLW SAETPELYQL IVSMKDDKGK LLQASSQHIG FRHIEIKAGQ LLINKRAITI
RGVDRHETDP LTGHVVSRES MERDIRLMKL NNINAVRSSH YPNDPYWLQL ADRYGMYIVD
EANIESHPLA IDEKTQLGNE MSWYPAHLAR VERMLERDKN HPSVIIWSLG NEAGEGKLFE
QLYRWVKQRD SSRPVQYEPA GMAAYTDIVA PMYPSIERIE TYAKAHTDRP LIMIEYAHAM
GNSVGNLQDY WDVIEKYPNL QGGFIWDWVD QSLKFTNEKG EDYWAYGKDY HPDMPTDGNF
LNNGLVDPDR NPHPHLSEVK KVYQAIGFDN FKFNGNFDDN LDDKSASIRL TNKYDFQSTK
GLTLSWSLQK DGIAVASGSE PMPVIAAGEA KSVTIKLTNK PALVFDSRYE YRLLVSVSLA
EPRPLIPAGH ELAFAQYLLL EASPNISPVS TATSLAETET RWQLSHGDNH YSISQISGWL
TEIEIDGEPQ IQAPLMANFW RAPTDNDLGN GMPDWGGVWQ DASAQLTLES IEPLEEHGLI
VTHQHPKLGI TLVTQYRVNK RGELMVNISF NPGKTALPDL PKFGFTTRLP FEQRYLSYYG
RGPEETYADR ASGNPFGWYQ LPIEKLFHRY SRPQETGQRT QIRYAAVRNS AGTGLMAVAQ
NEMQTSLWPF SLADIDFREG DAQGSASGLV PVTQNHGGEV PIRDFVTWNI DLKQMGVGGD
TSWGRPVHDK YRIKAEKMSF KFRLVPVTAQ SQLQQLARE
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