Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4016 |
Symbol | |
ID | 5611921 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4916606 |
End bp | 4918231 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934971 |
Product | sodium/hydrogen exchanger |
Protein accession | YP_001475748 |
Protein GI | 157377148 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4651] Kef-type K+ transport system, predicted NAD-binding component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000212571 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGGAACCCG CCATCCTTAT CACCACCTTA GCTTGCGGTA TGTTAGTCAG CCGAATAGGA CTACCGCCTC TTATCGGCTA TCTCGTAGCG GGGTTTGTAC TGTTTCTATT CGGTATCGAT GAATCGAGTC TTCCTCTGCT GGAGCAGCTG GCAGAGCTTG GTGTCACCTT ACTTCTGTTT GCCATCGGCC TTAAATTAGA TATCCGGAGT TTATTCAAAG CCGAGGTTTG GGCAGGCTCC AGCCTACACC TGATGGGCTC CATGCTGTTC TTTATCCCGC TACTCAAATT GCTTGGAATG CTGGGGTTGG ATCAACTCAC CGGACTAGAC CTTAATCAAC TGGCCCTGCT AGCCTTTGCC TTGAGTTTCT CAAGTACGAT CTTTGCCGTC AAAGTGTTGG AAGATAAGGG TGATATGCAA TCACTCTATG GCCGGGTCGC GATCGGTATC TTGATCATGC AGGATATTTT TGCGGTGGCT TTCCTCACCA TATCGAAAGG AGATATCCCC TCCGTCTGGG CCTTCGGACT ATTGCTGCTG CCATTTGCCA GACCGCTTAT CTATCGCGCC TTCGATCGTG TCGGTCACGG CGAACTTCTG GTGTTATTTG GCTTAGTGAT GGCTCTGGTA TTAGGCGCCT GGCTATTCGA GGCCGTCGGC CTTAAGCCCG ATTTAGGGGC ACTGATCATC GGTATTTTAT TAGCGGGTCA CCCTAAATCT TCTGAGCTGG CAAAGTCACT CTTCTATTTC AAAGAGCTCT TCCTTGTTGC CTTCTTCTTA ACGGTTGGCC TCAATGGACT GCCGACCTTC TCAGACATAG GTTTAGCCAC CCTGTTAGTG TTAGTCGTTC CTGTTAAGGT TGCACTGTTC CTCTACCTGT TAACCCACTT TAAACTGCGC TCCCGTACCT CCCTGATGAC CTCGTTTAAT CTGGGTAACT ACAGTGAATT CGGGTTAATT GTCGCGGCAG TTGCTACGAG TAAAGGATGG CTACCACCAC AATGGATGGT CATTATAGCC GTAGCCTTGA GTATCAGCTT CCTGGTTGCC GCCCCTTTAA ATGCAAGCTC CAGCCGCCTC TACCAGAAGC TTCATGGCAG GCTAAGGAAA CTGGAGAAAC ACCCGCTGCA TCCAGAGGAT AGAGAGATAC GCGTAGGCAA TCCAAGGTTC CTTATTTTAG GTATGGGTAG AATTGGTAGT GGTGCCTATG ATGAACTGAA AGCCAAATTC GACGGTGAGA TATTGGGTAT CGAACACAAG CAGGAGTTGG TCGACTACCA CAAAAAGAAG GGGCGTCATG TGGTTCAGGG AGATGCATCA GATACCGACT TCTGGGAGAA GCTTGAGCAT GCCCCGAATC TGGAACTGGT ACTACTCGCT ATGCCCCATC ATATTGGTAA TCAATTTGCT GTTGAGCAAC TACAGAGACT CAACTATAAA GGCAAGATGA GTGCGATAGT CCAATACACT GAAGATGCGC AATCCCTTAA AACATCTGGT GTTCATTGTG TCTATAATCT CTATGAAGCA GCGGGTGCCG GTTTTGTCGA TCATGTCATT AATGATCTTC TCCCGGACTC ACATGTGGCA CGCTCTAACG CCGAAGAGAT GAAAAACAGA GGTTAG
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Protein sequence | MEPAILITTL ACGMLVSRIG LPPLIGYLVA GFVLFLFGID ESSLPLLEQL AELGVTLLLF AIGLKLDIRS LFKAEVWAGS SLHLMGSMLF FIPLLKLLGM LGLDQLTGLD LNQLALLAFA LSFSSTIFAV KVLEDKGDMQ SLYGRVAIGI LIMQDIFAVA FLTISKGDIP SVWAFGLLLL PFARPLIYRA FDRVGHGELL VLFGLVMALV LGAWLFEAVG LKPDLGALII GILLAGHPKS SELAKSLFYF KELFLVAFFL TVGLNGLPTF SDIGLATLLV LVVPVKVALF LYLLTHFKLR SRTSLMTSFN LGNYSEFGLI VAAVATSKGW LPPQWMVIIA VALSISFLVA APLNASSSRL YQKLHGRLRK LEKHPLHPED REIRVGNPRF LILGMGRIGS GAYDELKAKF DGEILGIEHK QELVDYHKKK GRHVVQGDAS DTDFWEKLEH APNLELVLLA MPHHIGNQFA VEQLQRLNYK GKMSAIVQYT EDAQSLKTSG VHCVYNLYEA AGAGFVDHVI NDLLPDSHVA RSNAEEMKNR G
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