Gene Ssed_4016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4016 
Symbol 
ID5611921 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4916606 
End bp4918231 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content49% 
IMG OID640934971 
Productsodium/hydrogen exchanger 
Protein accessionYP_001475748 
Protein GI157377148 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4651] Kef-type K+ transport system, predicted NAD-binding component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000000212571 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGAACCCG CCATCCTTAT CACCACCTTA GCTTGCGGTA TGTTAGTCAG CCGAATAGGA 
CTACCGCCTC TTATCGGCTA TCTCGTAGCG GGGTTTGTAC TGTTTCTATT CGGTATCGAT
GAATCGAGTC TTCCTCTGCT GGAGCAGCTG GCAGAGCTTG GTGTCACCTT ACTTCTGTTT
GCCATCGGCC TTAAATTAGA TATCCGGAGT TTATTCAAAG CCGAGGTTTG GGCAGGCTCC
AGCCTACACC TGATGGGCTC CATGCTGTTC TTTATCCCGC TACTCAAATT GCTTGGAATG
CTGGGGTTGG ATCAACTCAC CGGACTAGAC CTTAATCAAC TGGCCCTGCT AGCCTTTGCC
TTGAGTTTCT CAAGTACGAT CTTTGCCGTC AAAGTGTTGG AAGATAAGGG TGATATGCAA
TCACTCTATG GCCGGGTCGC GATCGGTATC TTGATCATGC AGGATATTTT TGCGGTGGCT
TTCCTCACCA TATCGAAAGG AGATATCCCC TCCGTCTGGG CCTTCGGACT ATTGCTGCTG
CCATTTGCCA GACCGCTTAT CTATCGCGCC TTCGATCGTG TCGGTCACGG CGAACTTCTG
GTGTTATTTG GCTTAGTGAT GGCTCTGGTA TTAGGCGCCT GGCTATTCGA GGCCGTCGGC
CTTAAGCCCG ATTTAGGGGC ACTGATCATC GGTATTTTAT TAGCGGGTCA CCCTAAATCT
TCTGAGCTGG CAAAGTCACT CTTCTATTTC AAAGAGCTCT TCCTTGTTGC CTTCTTCTTA
ACGGTTGGCC TCAATGGACT GCCGACCTTC TCAGACATAG GTTTAGCCAC CCTGTTAGTG
TTAGTCGTTC CTGTTAAGGT TGCACTGTTC CTCTACCTGT TAACCCACTT TAAACTGCGC
TCCCGTACCT CCCTGATGAC CTCGTTTAAT CTGGGTAACT ACAGTGAATT CGGGTTAATT
GTCGCGGCAG TTGCTACGAG TAAAGGATGG CTACCACCAC AATGGATGGT CATTATAGCC
GTAGCCTTGA GTATCAGCTT CCTGGTTGCC GCCCCTTTAA ATGCAAGCTC CAGCCGCCTC
TACCAGAAGC TTCATGGCAG GCTAAGGAAA CTGGAGAAAC ACCCGCTGCA TCCAGAGGAT
AGAGAGATAC GCGTAGGCAA TCCAAGGTTC CTTATTTTAG GTATGGGTAG AATTGGTAGT
GGTGCCTATG ATGAACTGAA AGCCAAATTC GACGGTGAGA TATTGGGTAT CGAACACAAG
CAGGAGTTGG TCGACTACCA CAAAAAGAAG GGGCGTCATG TGGTTCAGGG AGATGCATCA
GATACCGACT TCTGGGAGAA GCTTGAGCAT GCCCCGAATC TGGAACTGGT ACTACTCGCT
ATGCCCCATC ATATTGGTAA TCAATTTGCT GTTGAGCAAC TACAGAGACT CAACTATAAA
GGCAAGATGA GTGCGATAGT CCAATACACT GAAGATGCGC AATCCCTTAA AACATCTGGT
GTTCATTGTG TCTATAATCT CTATGAAGCA GCGGGTGCCG GTTTTGTCGA TCATGTCATT
AATGATCTTC TCCCGGACTC ACATGTGGCA CGCTCTAACG CCGAAGAGAT GAAAAACAGA
GGTTAG
 
Protein sequence
MEPAILITTL ACGMLVSRIG LPPLIGYLVA GFVLFLFGID ESSLPLLEQL AELGVTLLLF 
AIGLKLDIRS LFKAEVWAGS SLHLMGSMLF FIPLLKLLGM LGLDQLTGLD LNQLALLAFA
LSFSSTIFAV KVLEDKGDMQ SLYGRVAIGI LIMQDIFAVA FLTISKGDIP SVWAFGLLLL
PFARPLIYRA FDRVGHGELL VLFGLVMALV LGAWLFEAVG LKPDLGALII GILLAGHPKS
SELAKSLFYF KELFLVAFFL TVGLNGLPTF SDIGLATLLV LVVPVKVALF LYLLTHFKLR
SRTSLMTSFN LGNYSEFGLI VAAVATSKGW LPPQWMVIIA VALSISFLVA APLNASSSRL
YQKLHGRLRK LEKHPLHPED REIRVGNPRF LILGMGRIGS GAYDELKAKF DGEILGIEHK
QELVDYHKKK GRHVVQGDAS DTDFWEKLEH APNLELVLLA MPHHIGNQFA VEQLQRLNYK
GKMSAIVQYT EDAQSLKTSG VHCVYNLYEA AGAGFVDHVI NDLLPDSHVA RSNAEEMKNR
G