Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4008 |
Symbol | |
ID | 5610430 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4907148 |
End bp | 4908212 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934963 |
Product | porin |
Protein accession | YP_001475740 |
Protein GI | 157377140 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000296209 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000599213 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGAAAA CGGTTCTGTC TGCATCAATC ATATCGACAC TAGCAATCAC CTCTTTCTCA GCTCTCGCTG ACGGCCCAAA TTTCTATGGC CGTGCAGATC TTGCATTCAC CAATTCTGAT CTCGGTGTCG CTACACAAAA CCAGAAATCG GGTACCATAA TTGAAAACAA CTTCTCATGG TTAGGTGTTA AAGGCACCGA GAAGATCAAT GAAAATTTTG AAGTGATCTA CCAGATGGAG TTTGGCGTGA CGAACTTCGA CAACTCAGGA GACACGTTCG GAGCCCGTAA CACCTACTTA GGCCTTAAGA GCGTTGCCGG TACTGCCCTT GTTGGTCGTA ATGACACCGT ATTCAAAGCC GCTGAAGGTG GCTTCGATCT CTTCGGTAAT ACTAACTCAG ATATCGATCT TCTTGCTGCC GGACAGTCTC GCAGCGCCGA TGGTATCAGC TATTACTCAC CAAAAATTGC CGACTTAGTG ACATTCAACG CAACTTACCT GGTTGAAGAC AACTATGTCT CCTATGATGA GACAACCAAT GACCGCATCG ATGCGGGCAA CATGTATGCG CTAAGTGCCA CCATAGGTGA CAAAGCGCTT AAGGCGCAAA ACTACTTCGT GTCTGGTGCC TATACCGATG GTATCGACGA TATCAAGGCC TATCGCGGCG TGGCACAAGT GAAACTGGGT GATGTGATCT TAGGTGGCTT CTATCAGAAC AGTGAACACT TAGACGATAA GTATTCAAAC CTGGAAGGCG ACACTTACTT CGTTAACGCC GCTTACGTTA TGGGTAACCT GAAGTTAAAA GCCATGTATG GTAACGACAA CTCGGGTCTT GGTAAGTATG TGAGCAGATT CGTTGGCAAT ACCGAGGGCG GAGCGATGGA GACGGTGTCT AATGTCGATC TGCAGCAGTT CAGTGTCGGT GCAGACTACC GTGTCAGCAA GAGCACACTA TTTTATGGTC ACTACACTAA GTTCGATGGT GACATGGTGC TAAACAGTGT CACGCAAAGC CTGAATGACG ATATCATCAC TGTCGGTATG CGTTACGACT TCTAA
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Protein sequence | MKKTVLSASI ISTLAITSFS ALADGPNFYG RADLAFTNSD LGVATQNQKS GTIIENNFSW LGVKGTEKIN ENFEVIYQME FGVTNFDNSG DTFGARNTYL GLKSVAGTAL VGRNDTVFKA AEGGFDLFGN TNSDIDLLAA GQSRSADGIS YYSPKIADLV TFNATYLVED NYVSYDETTN DRIDAGNMYA LSATIGDKAL KAQNYFVSGA YTDGIDDIKA YRGVAQVKLG DVILGGFYQN SEHLDDKYSN LEGDTYFVNA AYVMGNLKLK AMYGNDNSGL GKYVSRFVGN TEGGAMETVS NVDLQQFSVG ADYRVSKSTL FYGHYTKFDG DMVLNSVTQS LNDDIITVGM RYDF
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