| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3998 |
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| Symbol | |
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| ID | 5611071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4895747 |
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| End bp | 4896505 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640934952 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475730 |
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| Protein GI | 157377130 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.13761 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATAACC ATTTAAAAAC AAAATCAGTA ACAAGAGACA ATATTTTGGC TGAAGCTAAA
GTGCTAATCA TAGAGGAAGG GGTGTGTTCA TTTCGATTGT CTCAGATACC ACAAAGAGCT
AAGTGCTCCC CCAAAACATT TTATAGCCAT TTCAGGTCCC GGGAGGACAT TGTTGCGGCT
CTTTTTGTTG AGCATGTGAA TGATATCCTA GTCAAAACAG ACATGATAAT GGATATGGAC
GTTCTGAGTA ATAAAGAGAA AATAGTCTAT ACACTTATGT ACGATATCGT TAAGTGCTGG
TCTGCTAAAG AGGGGGATGT GTGCATAAAC TTCTTGGGTG TAAGTCCTCA CGTATATGGA
GTAGCGAGTC CTGAATATGA AGGGAATATT AATGTGGTAT TCATTGAGTT AAAAGCAAGG
GTTCAAGAGC TTTGGAGAAG GGCAATTAAA AGCAGGGAAC TCTTATCTAG CAAGAGGGAA
ATAATTGATT GTATTTTTTC TATGAGAACC ATAGAGCGAG GGAGTATTGT CATCGGTCAG
AATAAATTTT TACGCCAGCA CGGCCACGAT AATAGGATTG AAACAGTATT CAACTTACTG
TGCTTGGCCG CCAACACACT TAGCTGGACG AGTAAGCAGC CAATGTCATT CAATAAAATG
CTTAAAACGG TCACTCCTCT AGTTGATACC GCCGCCGGAA CAACTTTTAA ACACTGCAGA
TTAAATTATG AAACACTTAA TGAGCCAATA GAGCTTTGA
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| Protein sequence | MHNHLKTKSV TRDNILAEAK VLIIEEGVCS FRLSQIPQRA KCSPKTFYSH FRSREDIVAA
LFVEHVNDIL VKTDMIMDMD VLSNKEKIVY TLMYDIVKCW SAKEGDVCIN FLGVSPHVYG
VASPEYEGNI NVVFIELKAR VQELWRRAIK SRELLSSKRE IIDCIFSMRT IERGSIVIGQ
NKFLRQHGHD NRIETVFNLL CLAANTLSWT SKQPMSFNKM LKTVTPLVDT AAGTTFKHCR
LNYETLNEPI EL
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