| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3994 |
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| Symbol | |
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| ID | 5610206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4889774 |
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| End bp | 4890889 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934948 |
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| Product | long-chain fatty acid ABC transporter |
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| Protein accession | YP_001475726 |
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| Protein GI | 157377126 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2067] Long-chain fatty acid transport protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGAA GTAAAATCCT TTTAGCACTC TCTGCAACTG CAGTGATAAA TACAAGTAGC
GCCATGGCTG CAGGGCTTAG CCTGTCTCAA ATCGGCACCG CTGACAGTGT GGCAACCGCT
GGGGCTGCAG GAGTCACCAA TAATTCCGAT GCAGCAGCAA CCATCACTAA TGCGGCAGGT
TTATCAGGGA TAGAAGATTC AAATATGATG CTGGGTGGTC AGTTGTTAGA TGTGCGCTCT
CAATTTGAAC CTAAAGAGGG CGAGAGCACG CAGAGCAATG GCTTACAGTT TATCCCGCAT
CTGTCATATG CCAAACGGCT CAATGAAGAT TGGGTGGCTG GCATAGCGCT TCACTCGCCC
GGTGGCTTAG GTGTTGCTTA CAGTAATGGT ATTGCCGGTG GCGCGCAAAA TATCGTAAAA
GAGAACAAAA TAACCATGCT AAGCCTAACT GCTTCAGCAG CCTATCAAAT TAATGAACAA
CTCGCTTTAG GCGCCAGTAT CATCACCAAT TATGCCGGCG TTGAAGCCTC AGTGTTCGAT
CGCACCGTGA CTGGCAAACA GTTGGCACCC ACGTTTGCAC TTTCGGCTCA ATATCAACTG
AATGAGAAAA CACGCATTGG CGCAAACTAT CAACATGGTA GCGAACACGA TATCGAATTT
GACGAAGCAC TTCTCGGCAT TCAAGGCATG GCCATCAATT GGCCGGCGAC GTTTGACATT
GGCATAGATC ACCAGCTTAC CGAGCAATTG AACATTATGG CGAATGCCAA ATGGCAATCT
TGGAGTGACT ACGATGCTAA TTATCAAGAC ACCTACTCCG CAGGTATCGC TGCCGGGTAT
CAAGCGGGTC ACTGGCTGTG GCAGGCGGGA TTTAGCATTG ATAGTAGCCC TGTCGATGCC
GAGTATAGAG ACATTGTATT ACCGCTCGAT AAACAATGGC GATTAGGAAT TGGCGCTGAA
AAAACCTTAG CTTCAGGAGC TAAATTGGGG ATAGCCTACC AATATCAGAA CCTAGGTGAT
GCCGAGATAA TTTCCCAAGG GAGAGAGCTG CTTCGTCCAT CAGGAGAGTA CAGCGAGAAT
CGGGTGCACT TCATCACTTT ATCTTATCAA TTCTAA
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| Protein sequence | MNRSKILLAL SATAVINTSS AMAAGLSLSQ IGTADSVATA GAAGVTNNSD AAATITNAAG
LSGIEDSNMM LGGQLLDVRS QFEPKEGEST QSNGLQFIPH LSYAKRLNED WVAGIALHSP
GGLGVAYSNG IAGGAQNIVK ENKITMLSLT ASAAYQINEQ LALGASIITN YAGVEASVFD
RTVTGKQLAP TFALSAQYQL NEKTRIGANY QHGSEHDIEF DEALLGIQGM AINWPATFDI
GIDHQLTEQL NIMANAKWQS WSDYDANYQD TYSAGIAAGY QAGHWLWQAG FSIDSSPVDA
EYRDIVLPLD KQWRLGIGAE KTLASGAKLG IAYQYQNLGD AEIISQGREL LRPSGEYSEN
RVHFITLSYQ F
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