| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3993 |
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| Symbol | |
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| ID | 5610463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4886670 |
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| End bp | 4889747 |
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| Gene Length | 3078 bp |
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| Protein Length | 1025 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934947 |
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| Product | AcrB/AcrD/AcrF family metabolite exporter |
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| Protein accession | YP_001475725 |
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| Protein GI | 157377125 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATACCA ATACCGAAAA ACAAGGCAGC GGCATTGCCG GTTTTTTTAT TAAAAATGCC
GTCATTAGTT GGCTGATAAT GGTGTTACTT GGCGTCGGCG GCTACTTTGC GTTTCAAGAC
TTAGGCCGTC TCGAAGACCC GGAGTTTACA CCGCGCTCAG CCATGATTGT CACCAGCTAT
CCAGGTGCGT CTGCGCAGCA GGTCGAGGAG GAGCTATCAC TTCCTATCGA AAACGCACTG
CAACAACTGC CCTATGTTAA ATACATAAAG TCGGTTAATA CGGCGGGATT AAGCCAAGTC
GAAGTGATGA TGGAGTCGCA GTATACCGGC AAGTATCTGC CACAGATCTG GGATGAAGTT
AGGCGCAAAA TTGGCGACTT AAAGGGGCTT CCCCCCGGCG CGGATAAGCC AACGGTTAAC
GATGATTTTG GTGACGTATA TGGCATGATT TGGGGCATAT CTGGTGAAGG GTACAGTTAT
GCCGAATTAG AGTCATATGC TGACTATCTT CGTCGTGAGG TGGTGACGAT AGAGGGGGTG
AGCAAAGTCA GTGTTGCAGG TACACAGCAA CAACAAGTGT TTATCGAGCT TTCAAGGCGA
AAGCTAGCGG CGCTTGATAT CCCGGTTAGC CATATAGAGT CACTTTTAGC TCTGCAAAAT
GTGGTTTCAA ACGCCGGCAG AATTCGAGTG CAAAATGACA CCATTCGTCT GTCGCCAACG
GGGGAGTTCT CTAGTGTCAG TGAGCTGAAA AATCTTGTAG TTAGCCCCAA GGGCAGTGAT
GCGCGAATTT ATCTGAATGA TGTTGCTGAC ATTAGCACTG GTTACGCCAA AACCCCCATA
AAAATCATGA CCATTAACGG TCAGCCTGCA CTTGAATTTG GGGTGTCATT TCTTCGCGGC
CAGAACGTCA TCGCGGTAGG CGAGCGGATC AACACCTTAA TCGATTCGCT TGAAAAGGTT
CGGCCCATCG GCATGGAGCT GGAGCTTATC TACAATCAGC CAGAACAGGT TGAACAAGCG
GTCGATGGAT TTGTCATCAG CCTTATTCAA GCCGTTGCCA TCGTTATTTT TGTGCTTTTG
CTGACCATGG GGCTCAGAAG TGGCTTCATT ATTGGTACCG TTTTAATACT TAGTGTTATG
GGTACCTTTA TGGCCATGGA GCAAATGGCT ATTGATTTGC AAAGGATTTC ACTAGGCGCA
CTGATCATTG CTCTAGGAAT GCTGGTGGAT AACGCTATCG TAGTTGTTGA AGGCATACTC
ATCGGCATGC AACGTGGTAA ATCTCGCTTC GATGCGGCTG TGGAGATTGT AAAGCAAACC
CAATGGCCAC TGTTAGGGGC AACCGTTATT GCGGTAACCG CATTTGCCCC GATTGGCTTA
TCTGAAGATA TTTCGGGTGA GCTCGTTGGT AGTCTGTTTT GGGTGGTCCT GTTTTCATTG
ACGCTTAGCT GGATCACCGC TATTACCATC ACCCCATTCT TGGCCGACCG ACTGTTTAAA
AACGTTAAGG TTGCTAAAGA TGGTGAGTTT ATCGATCCCT ATAAAGGTGT CATTTTCACA
AGTTACCGAG TCTTGCTGCA AGGCTGTATT CGCTACCGCA AAACCACCAT GTTACTGCTC
ATTGTACTAT TGCTGGGTTC AGTGAAAGGC TTTGGCATGC TGAAAAATGA GTTCTTTCCA
CCAATGAACT TACCCAAGTT TATGGTCGAT ACATGGCTGC CATATAACTC CGATATTAAT
GCCACCGCTG AGCATATGAG AAAGGTGGAG GAGGCGGTAC TCGCACACCC TGAAGTAGAG
CAAGTTTCCT CTAGCATAGG TGGAGGTCAT GTTCGGTTCA TGCTCGCCTA TAAGCCTGAG
AAGCTTTACA ACAACTATGG CAATTTGCTC ATCACAGTCA AAGATATCGA TCGCCTCAAA
GAGGTGATGA GCGATGTCGA AGAGATTGTC GAGCAAGGCT TTGCCGGTGC GACATATAAC
TTCAAGCGCT TCGAGATGGG ACCTGCACCA GATGGCCGAG TTGAGGCAAG GTTTGTTGGT
CCGGATCCTG ATGTATTAAG GAGCTTATCT GCGCAGGCCA AAGCAATTAT GGAGCGTTCT
CAAGATGCGT CGGCCATCAG AGATGACTGG CGCGAGCGTA CCAAAGTGAT CCGGCCTCAA
TTCAATGATG CTGCGGGTCG GTCACTCGGG ATCAGCAAGG CGCAAGTGGA TGGCGTGTTA
CTGGCAAACT TCTCGGGCAG AACCGTAGGA CTCTATCGAG ATGGTAGTGA TTTGCTGCCC
ATCATTATTC AACCTCCAGA GCAGGAGCGA CTAGATATTG GCGGGATTAG TGAACTGCAG
ATTTGGAGTC ATGAGTTAAG CCAGTACGTC AATCTTGGCC AAGTGCTGAA AGAAGTACTG
GTGGAGTTTG AAGATCCCGT CATTATGCGA CGAGACCGCA AACGCACTAT TATGGCGATG
ACTGATGAAA GTCCAATGGG CAGTAGTACC ACGGCGTCAG TTTTAAACTC ATTTAAAGCT
GAAGTTGAAG CCATTGAGCT GCCCGAAGGC TACAACTTAA CTTGGGGTGG AAAGTATGAG
TCATCTCGCG ATGCCATGAT TGCCTTGAGT GAAAAACTTG GCGGCGGCTA TTTGGTCATG
GTGCTGATAA CCATCTTTTT GTTTGCCTCC TATAAAGATG CTGCTGTTAT CTGGACTGTA
GTGCCATTCG CTCTTATTGG GGTTGTCGTA GGTCTCTACT TTGCCAATAT GCCTTTCACC
TTCTTGGCAT TGCTGGGAAC CATGAGCCTA TCGGGCATGC TGATTAAAAA TGCCATTGTG
CTGGTTGAAG AGATAAAGCT GCAGCTCTCC CAAGGTAAAG AGGCCTACCT TGCTGTTGTG
GATGCGTCAG TGTCTAGGGT TCGTCCGGTA AGTATGGCAG CGGTTACGAC CGTACTTGGC
ATGATCCCAT TGATTTTTGA CGGCTTTTTC CAGGCTATGG CTGTTGCCAT TATGTCGGGC
CTCACCTTCG CCACGATATT AACCCTCATC GTGATCCCTG TGATGTACAC CATGATCCAT
AAAATCAAAG CGCAGTAG
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| Protein sequence | MDTNTEKQGS GIAGFFIKNA VISWLIMVLL GVGGYFAFQD LGRLEDPEFT PRSAMIVTSY
PGASAQQVEE ELSLPIENAL QQLPYVKYIK SVNTAGLSQV EVMMESQYTG KYLPQIWDEV
RRKIGDLKGL PPGADKPTVN DDFGDVYGMI WGISGEGYSY AELESYADYL RREVVTIEGV
SKVSVAGTQQ QQVFIELSRR KLAALDIPVS HIESLLALQN VVSNAGRIRV QNDTIRLSPT
GEFSSVSELK NLVVSPKGSD ARIYLNDVAD ISTGYAKTPI KIMTINGQPA LEFGVSFLRG
QNVIAVGERI NTLIDSLEKV RPIGMELELI YNQPEQVEQA VDGFVISLIQ AVAIVIFVLL
LTMGLRSGFI IGTVLILSVM GTFMAMEQMA IDLQRISLGA LIIALGMLVD NAIVVVEGIL
IGMQRGKSRF DAAVEIVKQT QWPLLGATVI AVTAFAPIGL SEDISGELVG SLFWVVLFSL
TLSWITAITI TPFLADRLFK NVKVAKDGEF IDPYKGVIFT SYRVLLQGCI RYRKTTMLLL
IVLLLGSVKG FGMLKNEFFP PMNLPKFMVD TWLPYNSDIN ATAEHMRKVE EAVLAHPEVE
QVSSSIGGGH VRFMLAYKPE KLYNNYGNLL ITVKDIDRLK EVMSDVEEIV EQGFAGATYN
FKRFEMGPAP DGRVEARFVG PDPDVLRSLS AQAKAIMERS QDASAIRDDW RERTKVIRPQ
FNDAAGRSLG ISKAQVDGVL LANFSGRTVG LYRDGSDLLP IIIQPPEQER LDIGGISELQ
IWSHELSQYV NLGQVLKEVL VEFEDPVIMR RDRKRTIMAM TDESPMGSST TASVLNSFKA
EVEAIELPEG YNLTWGGKYE SSRDAMIALS EKLGGGYLVM VLITIFLFAS YKDAAVIWTV
VPFALIGVVV GLYFANMPFT FLALLGTMSL SGMLIKNAIV LVEEIKLQLS QGKEAYLAVV
DASVSRVRPV SMAAVTTVLG MIPLIFDGFF QAMAVAIMSG LTFATILTLI VIPVMYTMIH
KIKAQ
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