| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3979 |
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| Symbol | |
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| ID | 5610420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4866815 |
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| End bp | 4868485 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934933 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475711 |
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| Protein GI | 157377111 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1315] Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGGATC CAGAACTCGT TGAACTAAGT GCTGACAATG TTTTTGTCGA ATTAAGAATT
ACTCCTAATA CCCATGGTCC AGTAACCGAG GAAGCTATTC TTGCGCTACT ATCACTCCCC
GAATTTGAGC AGCTTTTCCC TTTAGAGAAC ATTATCCTAA AGGCTGTTAT CGAAATAAAC
CAACTTTGCG GTCAGGACGA TGGTAAATTC GAACTGTTTT TTAAAATTGC AGAGCGCCGC
AATGGAACAA TAGAGATAGA AGTAAACGAA GATAAGATGG AGTCAGAGAT GCAACTTACC
GCAGCCTGGG GCGGCGAGGA AGTAAGCATT CAGGATATCT TGAAGGCATT GAAGGCAAAC
AATGTCTGCA TGGGACTCAG TAAAGTTAAA ATTCAAACAC TTCTCAAGCA GCTATCTCAA
CTCGGACCGG GAAAAACCTG TCGTAGCGTT ATTGCGACGG GAAAGCCCTC TTTAAACGGT
GACAACGCAC TCATTGAAAG AAAAGTTCCA CTTGCCAGAG AACGCCTGCT CCAACCTCAG
GAGAATGAAG ACGGCACTGT AGATATGCGT AATTTAGGCG CAGTCATCAT GGTAAAGCCC
GGCGATCTAC TCATGGAGAA AATTCCTGCC ACTATCGGTA CCGAGGGCTA TAACGTTCAT
GGTCAAATAC TGGCCCCACT ACCCGGTAAA GATACCACCC TTTCAGCCGG GGAAGGTACC
GAGTTATCAG AATCAAACCC TAACCTGTTA CTCGCCACAG TCCCGGGACA ACCCGTTGAG
ACCAAAACAG GAATGCAGGT TGACGATGTA CTCAATATCA AAGATGTCGA TGTCGGTTAT
GGTAACGTCG AGTTTAAAGG CAGTATCTTA ATCACGGGTG ATGTTCACGA AGGCATGGTT
GTAAAGTGTA GTGGTGATAT CACCGTCATC GGCTTTGTCG ATTCCGCGTC CCTGTTTGCC
GACGGCGATG TGATTGTCAG TAAAGGGATC ATTGGGAGAC AGCTCAAAGA GAGAGAGCTA
TCCACTAAGA TTAAAGCCAA GGGGCAAATA TGTGCTCAAT TCATCCAATA CTCAGATTTG
GATGCCGAGG GCGAAATTTT GGTGACTAAG CAGTTACTGC ACAGCCATAC ACGAACTAAA
CAAAGACTAA CGGTAAGCGA TGCGAATAAT CGCAGAGGAG ATCTCGTCGG CGGTGTAGTC
GAAGCCGCAA AAGGATTAAA GGCGGTGATC ATTGGAGCCA CCGCGGGAAC TAAGACCGAA
GTATTCTGCG CCATGGAGCA GAGTAACTTA AAAAACAATA TGAAGGAGCT GGATCAAGCG
GTTAAAAGCA TGGTCGTTGC TAAGCTAGAT ATTGAAGCTC GTCTTAAAAA GTTGCCACCT
AAGAGTGAAT GGCAAGGTGA CGAGATGATG GTTGAGCAAG TGAATATGAT GCTTGAGGAG
AAGAACCGCA TCACAGAGGA GTGGAAGAGA GAGGAGCTAG AATATGAGCT TACCAAGCAA
GAGGTCGAGA GTTATTATCA AGATAACCGC ATAGAGGCCC ATAAACATAT CTTTGCCAAC
GTCGAGCTTC ATATCGGACA AGCCTTTAAT CGAACCCAAC GTGAACATGG AACCTGTATC
GTATCTAATG AAAACCAAGA GATTAAATTC GATTACAGTA ACCGCAGTTA A
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| Protein sequence | MLDPELVELS ADNVFVELRI TPNTHGPVTE EAILALLSLP EFEQLFPLEN IILKAVIEIN
QLCGQDDGKF ELFFKIAERR NGTIEIEVNE DKMESEMQLT AAWGGEEVSI QDILKALKAN
NVCMGLSKVK IQTLLKQLSQ LGPGKTCRSV IATGKPSLNG DNALIERKVP LARERLLQPQ
ENEDGTVDMR NLGAVIMVKP GDLLMEKIPA TIGTEGYNVH GQILAPLPGK DTTLSAGEGT
ELSESNPNLL LATVPGQPVE TKTGMQVDDV LNIKDVDVGY GNVEFKGSIL ITGDVHEGMV
VKCSGDITVI GFVDSASLFA DGDVIVSKGI IGRQLKEREL STKIKAKGQI CAQFIQYSDL
DAEGEILVTK QLLHSHTRTK QRLTVSDANN RRGDLVGGVV EAAKGLKAVI IGATAGTKTE
VFCAMEQSNL KNNMKELDQA VKSMVVAKLD IEARLKKLPP KSEWQGDEMM VEQVNMMLEE
KNRITEEWKR EELEYELTKQ EVESYYQDNR IEAHKHIFAN VELHIGQAFN RTQREHGTCI
VSNENQEIKF DYSNRS
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