| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3977 |
|---|
| Symbol | |
|---|
| ID | 5611062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4864723 |
|---|
| End bp | 4865136 |
|---|
| Gene Length | 414 bp |
|---|
| Protein Length | 137 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640934931 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001475709 |
|---|
| Protein GI | 157377109 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGT TGGCTACATG GATGTTAGTA TTTTATCTTT TCTGTGCTCA TTCGAGTGCG
GCTCAGGTCA TCGTGAATGA TTCGGCCACC GATTTTCCGC TACCTGCACA AGAGCTACGT
CTGATTTTTT CTATGCAGAA AGTCTATTGG CCGGACGGAC ACAAAATCAA AGTATTTATC
CTCGCACCCG GTTCAGAGCT ACACAAAGAG TTTTGTTTTC AACAGCTCGA TATGATGCCG
TACATGCTTC AGCGCAGATG GGACCGGCTG GTCTTTTCCG GAACCGGTGA AAGACCCGTT
ATCTTAAAGT CTGAAGTTGA AATGAGAGAG CAGATATCGA GAACTCCCGG TGCAATCGGT
TATGTCAGTA ATTCAGTTTC TGTCGCGGGA GGCCTGTATG TTTACAACCG TTAA
|
|---|
| Protein sequence | MRLLATWMLV FYLFCAHSSA AQVIVNDSAT DFPLPAQELR LIFSMQKVYW PDGHKIKVFI
LAPGSELHKE FCFQQLDMMP YMLQRRWDRL VFSGTGERPV ILKSEVEMRE QISRTPGAIG
YVSNSVSVAG GLYVYNR
|
|---|
| |