| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3975 |
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| Symbol | |
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| ID | 5611060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4861067 |
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| End bp | 4863553 |
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| Gene Length | 2487 bp |
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| Protein Length | 828 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934929 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001475707 |
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| Protein GI | 157377107 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCGC CCGATACTAA GAGTATCTTT ATCAGCTTGA AATGGAAGCT GCTTATTGCG
GTAATGGTTA TGTTGACCAT TTTAGGAGGG ATCTTAGGTG GCTTTACCTT TCGTCAATTG
ATCAATCAAC AAAGTTATCA ACTCGCTTCA CAGCAAAATA AACTGGCTCA AAACCTCCAA
AGTTCGATCT CATTAACGGT AGATCAGTCT CTGCTGGCGG CTCAACAGAT AGCCTTAATG
GTTAACGACG GAGACCGTGA TGGTGCAAAG TTTGATGTGG GTAAGTATCA GGAGATGCTG
GATAAGCGTT GGCCTGATAT TCAACTGTAC TGGGAGTTAA GGACTATTCA CCTGATGTCA
CTATCCGGGG AGGTGCTGGC ACATGCCGGC AATCGGGTCG ATATCGAAGA TAGGCAATGG
TTCGAGAGCA GCTCGGTGAG TATCGAACCA CATTGGCGCA TCGTGTGTCA TCGTGAATGT
GTGATTCAAG TCTTGGTCCC CAATTTACTG CAAGGAGAGC CCCACCTTCT GTTTTTAGAG
TCAGGGTTGA CCGATATCCT GGCTCGATTT CGGGTAAACG GCTCGTTTGA GTTAGCCGTA
CTCGGTCCCA GAATCGTGCA TCCGGTAGGC CGTAACTATT GGGCCAGAGA GCTATATAGC
ATAAGCAATA AACGTACTAG TTTGCCTAGC TTGCAAAAAA TTGCCGATAA TTTTAGTTGG
GATCAGATTG CCACCAAGGG AGGGATATAT GAAGTTAATG GAGAATATTC GGCTATCTGG
ATCTTCCCTC TGGCTGAAGA GGCTAACTCT CCCGCAATCT TAGTGATCAA CAACATCAGT
GATTGGCAGG CAATACTCAA TGAGTTTCAG GAGAGCATGC TGGGAACGCT TCTGTTTGCC
CTTGTGTTAT CCGGCTGTCT CGTCATTCTC GTCGCTTGGG CGCCCGTGGT GAGTTTGAGC
CGGCATGCCA ACCTACTCCC TCTACTTGCA GAGCATGATT TTGAAACCTT AAAAAAGTTA
TCGCCGAAAT CATCATCGCT AATCGTCGAT GAAGTAGACC TTATCAATAC GGCGACTCAT
CAACTTGCGG AAAGGCTGCA AAACTTGGAG TTGGAGGTCG ATGAGTATAC TTGCGAACTC
AAGCGGTTAG CCATGCTCGA CACGCTGACG GGGCTACCGA ATAAAGCGAT GTTGATGCAT
GAGCTCAAAA AGACCATCGC TTGTGTGGGA CGTATTCATG ATCAAGTTGC CTTAATGTAT
CTGGATCTCG ATGAGTTCAA GCGTATCAAT GACACCTTAG GTCATACCCA AGGTGATGAG
CTGTTGAAGA TAGTGGCAAC CCGATTAAAT AATAGTGTCC GGGCTATGGA TACGGTATTC
AGGCAAGGTG GAGACGAGTT TCTTATTTTA CTGCGAGGGA TCCGATCTGA TCAGGATGTA
CGTAAAGTGA TCCACAAAAT TTTTGCCTCG CTACAGCAGC CTGTCGTTCT CGGGAATCAT
AAGTTGATCG TGACTACCAG TATCGGTGTT GCCTATTGTA AAAGCATGAA TGTCAGGGCC
GAAGAGCTAA TTAAATATGC CGATTTAGCC ATGTACCAGG CGAAGGATGC GGGCAGGAGT
AACTATCGGG TCTTTACCGA AGAGATGTTG CATAAAGCTA ATAACCGCTT AATGATCGAG
CAAGATATAG GGGCCGCCAT TGCAGAGAAG CAACTCTCTT TGTTCTTGCA ACCTATCGTC
GCCTTACCCG ATAGTAAACT AAAAGGCTTC GAGGCATTGA TACGATGGTT TCATCCTGAA
CTGGGACTTA TTATGCCGGG AGATTTTATT CCCGATATTG AACACAGTGA GGCGATAATT
CGGGTAGGAA ATTATGTATT GGAAGAGGCG GGGGCAATCT TATCTCGATT AAGAAAGCAG
GGGTGGGAAG ATCTGTATAT GGCGGTCAAT CTATCGGCTA AACATTATAT GGATCCCGGC
TTGATCCCTC TCGTTCAGCA TATTTTGTCT AAATATGATC TTCCTCCTGA AAGCCTATTA
TTGGAGGTGA CGGAGGAAAG CGTGATTGAA CAGGTTGATC TGGCGCTGTC TGCAATGAAG
TCTCTCAAGC GTTTGGGAGT CAGGATAGCG ATTGATGATT TTGGTACAGG ATACTCCTCC
TTAAGCTATC TTAAACAGTT GCCTTTCGAT GTCCTCAAGA TAGACAGATG CTTCACTGCC
GGGGTACTCG AGGGGGGAGC CGATACACAT ATTGTGACTA CGGTTATTGA TTTAGCCCAT
AACTTAGGAC GAACGGTGGT CGCAGAAGGC ATAGAGACCC CTCAGCAATG TGATTTCTTA
GCCGACGCCA AGTGTGAACT CGCTCAAGGG TACCTTTTCT CGAAGCCTTT GGAAGAGGAA
AAGGTGTTTG GAATATTAAA TCAGATAGAC CGGGATCGAG TCTGGCCGGT AGAGACCGCT
CCCCAACTGG GTAAGTTGGG GAGCTGA
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| Protein sequence | MTAPDTKSIF ISLKWKLLIA VMVMLTILGG ILGGFTFRQL INQQSYQLAS QQNKLAQNLQ
SSISLTVDQS LLAAQQIALM VNDGDRDGAK FDVGKYQEML DKRWPDIQLY WELRTIHLMS
LSGEVLAHAG NRVDIEDRQW FESSSVSIEP HWRIVCHREC VIQVLVPNLL QGEPHLLFLE
SGLTDILARF RVNGSFELAV LGPRIVHPVG RNYWARELYS ISNKRTSLPS LQKIADNFSW
DQIATKGGIY EVNGEYSAIW IFPLAEEANS PAILVINNIS DWQAILNEFQ ESMLGTLLFA
LVLSGCLVIL VAWAPVVSLS RHANLLPLLA EHDFETLKKL SPKSSSLIVD EVDLINTATH
QLAERLQNLE LEVDEYTCEL KRLAMLDTLT GLPNKAMLMH ELKKTIACVG RIHDQVALMY
LDLDEFKRIN DTLGHTQGDE LLKIVATRLN NSVRAMDTVF RQGGDEFLIL LRGIRSDQDV
RKVIHKIFAS LQQPVVLGNH KLIVTTSIGV AYCKSMNVRA EELIKYADLA MYQAKDAGRS
NYRVFTEEML HKANNRLMIE QDIGAAIAEK QLSLFLQPIV ALPDSKLKGF EALIRWFHPE
LGLIMPGDFI PDIEHSEAII RVGNYVLEEA GAILSRLRKQ GWEDLYMAVN LSAKHYMDPG
LIPLVQHILS KYDLPPESLL LEVTEESVIE QVDLALSAMK SLKRLGVRIA IDDFGTGYSS
LSYLKQLPFD VLKIDRCFTA GVLEGGADTH IVTTVIDLAH NLGRTVVAEG IETPQQCDFL
ADAKCELAQG YLFSKPLEEE KVFGILNQID RDRVWPVETA PQLGKLGS
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