Gene Ssed_3971 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3971 
Symbol 
ID5613973 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4857133 
End bp4857888 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content47% 
IMG OID640934925 
Productdeoxyribonuclease I 
Protein accessionYP_001475703 
Protein GI157377103 
COG category[L] Replication, recombination and repair 
COG ID[COG2356] Endonuclease I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAATTGT TTGATAAATT TGGCTCAGCC TTTCTATTTG GCTTAGGGCT GACTCTACTA 
TTTTCCACAC CCTCAACCGC TTCACCTTCT CACCCAAGCA GTTTCAGCCA AGCCAAGAGA
CTGGCAAAAG AGATCTATGT TAACTCTCTC CCTGCCACCA GCTTCTATTG TGGTTGCGAT
ATCAAGATCT CAGGCAAGAA GTGGCAGACC GATTTCTCCC GTTGTGGCTA TCAGGTGAGA
AAGCAGCAAA AGCGCGCAGC GCGGATCGAG TGGGAGCACA TAGTACCGGC ATGGGAACTT
GGGCACCAAC GGCAATGCTG GCAGCAAGGT GGTCGTAAAA ACTGTGGTAA GAATGATAAA
CTGTTCAGAA AAATGGAGTC GGATCTGCAT AACCTGGTGC CCGCCATCGG CGAAGTCAAT
GGCGACCGGA GCAACTACAG GTTTAGCCAA TGGAATGGCC AGGCAGATCA ATATGGTCAA
TGTGATATGG TTATCGACTT CAAATCGAGA AAGGCTGAAC CACCCGGCTA TACGCGAGGC
AAAATTGCCC GCACTTACCT CTATATGCAA AAGAGATACG GTTTCAGAAT AGCCAAAAGC
CAATTAAAAC TGTTCAAAGC ATGGGATAAA ACTTATCCAG TTGATACTAT CGAATGCAAA
AGAGACAACG CCATAGCCAT GACTCAGGGA AACCATAACC CTTTTGTTAA AAACCAATGT
GACGCAATAG CCAAAGAACT GCGGGTTGCG GAGTAG
 
Protein sequence
MKLFDKFGSA FLFGLGLTLL FSTPSTASPS HPSSFSQAKR LAKEIYVNSL PATSFYCGCD 
IKISGKKWQT DFSRCGYQVR KQQKRAARIE WEHIVPAWEL GHQRQCWQQG GRKNCGKNDK
LFRKMESDLH NLVPAIGEVN GDRSNYRFSQ WNGQADQYGQ CDMVIDFKSR KAEPPGYTRG
KIARTYLYMQ KRYGFRIAKS QLKLFKAWDK TYPVDTIECK RDNAIAMTQG NHNPFVKNQC
DAIAKELRVA E