Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3971 |
Symbol | |
ID | 5613973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4857133 |
End bp | 4857888 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934925 |
Product | deoxyribonuclease I |
Protein accession | YP_001475703 |
Protein GI | 157377103 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2356] Endonuclease I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAATTGT TTGATAAATT TGGCTCAGCC TTTCTATTTG GCTTAGGGCT GACTCTACTA TTTTCCACAC CCTCAACCGC TTCACCTTCT CACCCAAGCA GTTTCAGCCA AGCCAAGAGA CTGGCAAAAG AGATCTATGT TAACTCTCTC CCTGCCACCA GCTTCTATTG TGGTTGCGAT ATCAAGATCT CAGGCAAGAA GTGGCAGACC GATTTCTCCC GTTGTGGCTA TCAGGTGAGA AAGCAGCAAA AGCGCGCAGC GCGGATCGAG TGGGAGCACA TAGTACCGGC ATGGGAACTT GGGCACCAAC GGCAATGCTG GCAGCAAGGT GGTCGTAAAA ACTGTGGTAA GAATGATAAA CTGTTCAGAA AAATGGAGTC GGATCTGCAT AACCTGGTGC CCGCCATCGG CGAAGTCAAT GGCGACCGGA GCAACTACAG GTTTAGCCAA TGGAATGGCC AGGCAGATCA ATATGGTCAA TGTGATATGG TTATCGACTT CAAATCGAGA AAGGCTGAAC CACCCGGCTA TACGCGAGGC AAAATTGCCC GCACTTACCT CTATATGCAA AAGAGATACG GTTTCAGAAT AGCCAAAAGC CAATTAAAAC TGTTCAAAGC ATGGGATAAA ACTTATCCAG TTGATACTAT CGAATGCAAA AGAGACAACG CCATAGCCAT GACTCAGGGA AACCATAACC CTTTTGTTAA AAACCAATGT GACGCAATAG CCAAAGAACT GCGGGTTGCG GAGTAG
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Protein sequence | MKLFDKFGSA FLFGLGLTLL FSTPSTASPS HPSSFSQAKR LAKEIYVNSL PATSFYCGCD IKISGKKWQT DFSRCGYQVR KQQKRAARIE WEHIVPAWEL GHQRQCWQQG GRKNCGKNDK LFRKMESDLH NLVPAIGEVN GDRSNYRFSQ WNGQADQYGQ CDMVIDFKSR KAEPPGYTRG KIARTYLYMQ KRYGFRIAKS QLKLFKAWDK TYPVDTIECK RDNAIAMTQG NHNPFVKNQC DAIAKELRVA E
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