Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3963 |
Symbol | |
ID | 5613747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4844395 |
End bp | 4845279 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934917 |
Product | hypothetical protein |
Protein accession | YP_001475695 |
Protein GI | 157377095 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.144543 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.129841 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATAAGG TGTTTATTAT TTCGCAAAGA GAGGAAGCGC ACACGGATGC AGTTGCTACA GGGATCGAGT TGGCCAGAGC GATGGATAAA CGCGCCGAAG TTTTTGCATA TAGCTTTGAA TATTTCAGTG GTGCGGAATA CTATAATCCA CGCCTCGGCG CCGCCGCCCA ACAGAAAATA ATGAAAGACC GTGCGGCTAA AATTGAGGAC GAGCTGCAGA CATTGAAGGC AGCAGATGTG CCCGTACACA CAGTATGGAG TAAGGATCTG CATGAACATG CCTGTCATCA CTCTATACGT CATGGTTTCG ATCTCATGGT AAAGGCGGTA CATCATGCGG AGCACTATCT TCCTGTCGAT TGGAATTTGA TCCGTCATGT TAAAATTCCT CTTATGCTAC TGACTGATAA TCCCCTACAT AGAGGAAATG CCATATTGAT GGCCGTCGAT CTCGGTAGTG ATAATGTGCT TAAACAGCAG CTCAATCAGG CCGTTATCAG TCACGGCAAG GCATTAGCAA AAGCGACCGG TAGTAAGTTG CACCTTGCTT TTGTGATCAG AGTACCCAGG GTGTTGCGGG ATATGGATCT GATCAACACC AGTACAATAG TTAAAGATGC CTATCAGGAG CATCAGAAAC AGTTGGCTAA ATTGAATATG GATCCTGAAT GTATACATAT CATCGCCGGG GATCCCGATC TCTGTCTCTA TGAACTCTCC TGCCGTCTGA AAGCGCGTTA TCTGGTCCTT GGAGCCCGTC AGCGTCAAGG CATCTTGGGC TATGTTATCG GTAATATGGC CGAGTCCATT CTCAGCAGAA CCCGCAGCAA TGTCCTGATT ATTCCGGCCG ACGATCAGTT ATTGGCTCCC CTAAGTTCGG ATTAG
|
Protein sequence | MDKVFIISQR EEAHTDAVAT GIELARAMDK RAEVFAYSFE YFSGAEYYNP RLGAAAQQKI MKDRAAKIED ELQTLKAADV PVHTVWSKDL HEHACHHSIR HGFDLMVKAV HHAEHYLPVD WNLIRHVKIP LMLLTDNPLH RGNAILMAVD LGSDNVLKQQ LNQAVISHGK ALAKATGSKL HLAFVIRVPR VLRDMDLINT STIVKDAYQE HQKQLAKLNM DPECIHIIAG DPDLCLYELS CRLKARYLVL GARQRQGILG YVIGNMAESI LSRTRSNVLI IPADDQLLAP LSSD
|
| |