| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3954 |
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| Symbol | |
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| ID | 5612819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4831371 |
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| End bp | 4833920 |
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| Gene Length | 2550 bp |
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| Protein Length | 849 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934908 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475686 |
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| Protein GI | 157377086 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0372326 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAGGC AACTGCTATT GAGTTGCAGG CTATGCTTAT CGACCTTCAG TGCACACTAT
CGCCAATCCC CGCTGCAGGC GGGCTCGATA TTAATCGGCA TAATACTCGC GGTCACGCTG
CTCATCGGTG TTCGTGCCAC CAACGAAAGT GCCATCGCCA GTTATAGCGA TGTCACAGAA
CTGTTGAGTC AGCAGGCCCA TTACTCAATA GTCCCAATCG TTGGCAGCAA ACGGCTCGAT
GAATCGCTCT ATTTTGATCT CAGAACTCAG GGGTTCAGTA ACGCCCTTGC GGTAGTTCAG
GGGATATTGA CCGACCAGAA CAATCGCCGC TGGCTGGTGC AAGGAAGCGA TCTTATTGCG
GCGCTCACCG CGCTATCAAG CAATGTTAAA CATGAGAATA AAACTAATAG TAAAACCAAT
AGCAGTAAAT CGAATCACAC CGAAGCGGAC CTTCAAGCTT CCCGGCCGAC TCTACTGAAA
AATGAACTCC CACTTGCAGC CCTGATAAGC GGCGCCCCCA TGGTGCTGAT GAGTCAAGAT
CAGGCTAAGC AGTTCACCAC AGAAACCCCT TTTACGCTAA ACGGCGTGAA GCTTGAGGTG
GTTGGCGTCG ACGATACGAT GAATCTGGGC AACCGTCTGC TGATGGATAT CTCTCTGGCT
CAGACGCTAT TGGGCCGCCA GGGAAGTCTG AGTTACATTG CACTTTTTGG CGATATCACA
AAACAGAGAG GGCAGATAGA GGCACTCATC GAAGGCCGTG GGGAGCTAAA CGAACGCGAT
GGCGGAGAGA GCATGACGGC CCTGACCGAC AGCTTTCATC TTAATCTCAG TGCCATGAGC
CTGCTGGCCT TCGTTGTAGG TCTGTTTATC GCCTATAACG GTGTACGTTA CAGCCTGTTA
AAAAGACAGA GGTTGCTCAC TCAGTTGCAA CAACAGGGCG TCGCCAAGGC CCCCTTGATG
CTGGCACTTT GCTTCGAGCT GTTGCTACTG GTGATAGTGG GGTCGGTGCT GGGGTTTGTT
TTAGGCTTAC AGCTCAGCCA CTGGTTACAA CCTATGGTGT CTGTCACCCT CGAGCAGCTA
TATGGCGCCA ATATCTTACC GGGCAGATGG CAGTGGAGCT GGCTACTGCA AGCTATGCTG
CTGACTTTTA TCGCCGCCCT GCTCGCCTGT GCTTCATTGC TTATCGATCT CATCAGGCAA
CCTTTAGGGC GTAACAGTAA CGCATTCTGC CGGGTAAGAA GCGCCGCAAA GACGCAGAAG
ATTCAAATTA TCACAGCGTC ATTATTGGCT CTCTTTGCGG CGATATTGAT GCCACTTAGC
CAGGATTATC AATTGACCAT GTCACTGTTG GGGTTAGTGG TTATCGCTAT TCCTCTGTCG
CTGCCATGGT GTCTTGCTCG GCTGGTCTCC TGGCTTAACC TGATGGTTCC TAAGGGACTT
ATCGGCTATC AGATTGCCGA AACAAAAGAG TTACTCCCGC CACTTTCCCT GGCCATGATG
GCCATGTTGC TGGCCCTGAC CGCCAATATA TCGATGAACA CCTTAGTCGG CAGTTTCGAG
ATCACCCTCA AAAATTGGCT CGATGCGAGA CTCCATGCCG AACTTTACCT CAGACCCGGC
GATACACAGA TGCAGGAGGT GGTCGCCTCC CTCGAAGACA ACCCTAAAAT CGACTCAGTC
TATAAACAGT GGAATCTGAT AAGTAAGGTA TCAAACCACC CTACCTATCT GCTGACTCGT
GACCCGGTAT CGATCAAGCG CACCACAGTG CTAAAAAGCG CAATCGATGA TCTGTGGCCG
GACTTTTTTG CCGGTAAACA CCTGCTGATG AGTGAGCCTT TGTCACTCAA ACTTGGACTG
GAGTTGGGGG ACAGAGTCAC CATTGCGGCA CTGGATGATG CGAGCCTTAC TCTGGGAGGG
ATCTATTTCG ATTACGGTAA CCCCTATGGC GAGATAATCC TGGCTCCTGT GATATGGCAA
AACTCAGGTT TTAACGACAC CCCCACCAGC CTGGGATTGG CTACCAGTGA AGATATCGAC
ACTCTGAAAC TCGAGCTACA GCAAAAGTTC TCCCTCAGTG ATAGTCAGAT CTACAGTCAG
GAGAGAATAA AGCGGCAGGC GATCGCCATG TTTAAGCGCA CCTTCTCCAT CACTCAGGTG
CTCAACAGTC TCACCCTGCT TGTCGCCGCC GTTGGCCTAT TCAGTGCCAG CTTTTTACTT
ACCCAGGCAC GCATGGCTCC GATGGCGAGA CTCTACTGTC TGGGTGTATC GAGGCGCCAA
TTAGGTTTTA TGGTATTTAG CCAGATGTGG CTCATCGTGC TGTTAACTTG CCTGGTCGCC
CTACCGACGG GAGCGATACT CGGTTATCTG CTTATTAATA AGATCACCCT GCAGGCATTT
GGTTGGACTA TTAATATGGT GTGGGATTGG CAAGCCTATG GCCAAGTGGT ACTGCTTGCG
CTATTGGCAA CGACCATAGC CATCGCTCTC CCCCTCTTTA AGCTAATCCG TAAACCTCTG
ATCTCCAGCC TACAGAGTGA CCTGTTATGA
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| Protein sequence | MNRQLLLSCR LCLSTFSAHY RQSPLQAGSI LIGIILAVTL LIGVRATNES AIASYSDVTE
LLSQQAHYSI VPIVGSKRLD ESLYFDLRTQ GFSNALAVVQ GILTDQNNRR WLVQGSDLIA
ALTALSSNVK HENKTNSKTN SSKSNHTEAD LQASRPTLLK NELPLAALIS GAPMVLMSQD
QAKQFTTETP FTLNGVKLEV VGVDDTMNLG NRLLMDISLA QTLLGRQGSL SYIALFGDIT
KQRGQIEALI EGRGELNERD GGESMTALTD SFHLNLSAMS LLAFVVGLFI AYNGVRYSLL
KRQRLLTQLQ QQGVAKAPLM LALCFELLLL VIVGSVLGFV LGLQLSHWLQ PMVSVTLEQL
YGANILPGRW QWSWLLQAML LTFIAALLAC ASLLIDLIRQ PLGRNSNAFC RVRSAAKTQK
IQIITASLLA LFAAILMPLS QDYQLTMSLL GLVVIAIPLS LPWCLARLVS WLNLMVPKGL
IGYQIAETKE LLPPLSLAMM AMLLALTANI SMNTLVGSFE ITLKNWLDAR LHAELYLRPG
DTQMQEVVAS LEDNPKIDSV YKQWNLISKV SNHPTYLLTR DPVSIKRTTV LKSAIDDLWP
DFFAGKHLLM SEPLSLKLGL ELGDRVTIAA LDDASLTLGG IYFDYGNPYG EIILAPVIWQ
NSGFNDTPTS LGLATSEDID TLKLELQQKF SLSDSQIYSQ ERIKRQAIAM FKRTFSITQV
LNSLTLLVAA VGLFSASFLL TQARMAPMAR LYCLGVSRRQ LGFMVFSQMW LIVLLTCLVA
LPTGAILGYL LINKITLQAF GWTINMVWDW QAYGQVVLLA LLATTIAIAL PLFKLIRKPL
ISSLQSDLL
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