| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3948 |
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| Symbol | |
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| ID | 5613859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4826091 |
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| End bp | 4827056 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934902 |
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| Product | glycine cleavage T protein (aminomethyl transferase) |
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| Protein accession | YP_001475680 |
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| Protein GI | 157377080 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0354] Predicted aminomethyltransferase related to GcvT |
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| TIGRFAM ID | [TIGR03317] folate-binding protein YgfZ |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.828839 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.672374 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACTT CAGTTTCTCA GCTCGATTGG AACTTGAATG ATCCGCTTCC ATCGCTTGTT
TTTTCAGATC TGACTCACCT TGGACTCATG AGCATTACCG GTGAGCAAGG CCGTAGCTTC
ATTCACGGGC AAGTCACTAC CGACATCAGC TCACTCGAGA AAGATCAATG GTGTTGGGGC
GCTCACTGCG ATCCAAAAGG AAAGATGTGG GCCAGCTTCC GAACATTTGC CATCGAAGAT
ACGCTCTTCA TGATGATGCC CTCGGATACC CTCGAGGTCG ACCTGCCACA ATTGGCTAAA
TATGCCGTAT TCAGTAAGGC TGAGTTAACG AATGTTAGCA GTGACTGGTT GATTCTGGGT
GTCGCCGGAG AACAGGCTCA AGAGTGGGTA AATAACTACT TTGGTGATAT AGACAAAGCA
GTGACAGAGA TCCCCGGTGG TGCCTTGCTG AAAGACGGCT CACGTTTCAT CATCGTCATT
GAAAAGACTC CATCTCAGGC ACTACTGACC TCAATCAATG CCCCTATCTA TGAGTGCAAA
GTCTGGCAAG CGCTCGAGAT CCAGTCGGGT TATCCTAACC TTGCCGCCGC CCATCAGGGA
CACTTTGTTC CTCAGATGTG TAATCTGCAG GCCATCGGTG GGATCAGTTT CGAAAAAGGC
TGCTACATGG GCCAGGAAAC CGTAGCCAGA ATGAAGTACC GTGGCGGCAA TAAGCGCGCC
CTCTATATCT TATCGGGCAA CGCTTCTGAA GCAGTGACTT TGGAGAGTAA GTTAGAGCTG
GCACTTGAGG ATGGATTCAA GACAACCGGT ACTATCATCG AAGTCGTACA ATCGGGCGAG
CAGGTACTGC TCACGGCAGT GCTACCAAAC GATACCGAAA ACTCGGCGAG TCTGAGACTT
ACAGGTGATG AGAGTTCTTC GCTAACCATT CAGCCTCTGC CCTATTCTCT GGAAGATGAA
GCATAA
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| Protein sequence | MTTSVSQLDW NLNDPLPSLV FSDLTHLGLM SITGEQGRSF IHGQVTTDIS SLEKDQWCWG
AHCDPKGKMW ASFRTFAIED TLFMMMPSDT LEVDLPQLAK YAVFSKAELT NVSSDWLILG
VAGEQAQEWV NNYFGDIDKA VTEIPGGALL KDGSRFIIVI EKTPSQALLT SINAPIYECK
VWQALEIQSG YPNLAAAHQG HFVPQMCNLQ AIGGISFEKG CYMGQETVAR MKYRGGNKRA
LYILSGNASE AVTLESKLEL ALEDGFKTTG TIIEVVQSGE QVLLTAVLPN DTENSASLRL
TGDESSSLTI QPLPYSLEDE A
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