| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3947 |
|---|
| Symbol | |
|---|
| ID | 5611534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4824711 |
|---|
| End bp | 4825946 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640934901 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_001475679 |
|---|
| Protein GI | 157377079 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.186942 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.899973 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAAC ATTCGCTGGA CAAGGATAAG ATCAAGATCC TGCTGTTGGA AGGCGTCCAC
CAATCTGCGG TAGATGTACT CGAACGTGCG GGCTATACCA ACATTGAATA CCACAAAGCA
TCCCTCGGGG AGGAGGCACT CATCGCCTCT ATTAAGGATG CACATTTTGT CGGTCTTCGT
TCCCGTACTC AGCTTTCGGA AACGGTATTG AGTCAGGCTG ACAAATTGGT CGGTATTGGT
TGCTTCTGTA TAGGCACCAA TCAGGTAAAC CTTAAGGTTG CAGAGAAGTT GGGCATACCT
GTATTTAATG CACCGTTTTC TAACACACGA AGCGTTGCAG AGTTAGTATT GGGCGAGATT
ATCATGCTCC TGCGTGGCAT TCCGCAGCGT AATGCTATGG CACACAGAGG CGGATGGTTA
AAGAGTGCCA GCGGTAGCTT CGAAGCTCGT GGAAAAACCT TAGGTGTTAT CGGTTACGGT
CATATTGGTA CTCAGCTTGG TATCTTAGCT GAAACCTTAG GCATGAGAGT GATCTTCTTC
GATATCGAAG ATAAGTTGCC TCTTGGTAAC GCCCAACAGA TCCACTCTAT GCAGGAGTTG
ATGACTCTTG CCGATGTGGT CAGTCTGCAT GTACCCGAGA CCCCACAGAC CAAAGAGATG
ATCGGCGAAG CCGAACTTGC CTGCATGAAG AAGGGCAGCA TCTTGATCAA TGCCTCTCGC
GGAACCGTTG TCGATATCGA CGCGCTGGCA TCTGTGCTCG AAGCAGACAA GATTGCCGGT
GCGGCAATCG ATGTGTTCCC TGTCGAACCG AAATCCAACG ATGATGAGTT TATCAGCCCT
CTTCGTGGCT TAGATAATGT CATCTTGACG CCGCACGTCG GTGGAAGTAC GCAGGAAGCT
CAGGAAAATA TCGGCATCGA AGTGGCCGGA AAACTGGCTA AATACTCAGA CAATGGCTCG
ACCATGACTG CAGTAAACTT CCCCGAGGTA TCACTGGCAC AACATAAAGA TACCTCTCGT
CTGCTGCATA TTCATCATAA CCAACCAGGT GTGTTAATTC AGATTAACCA AGCCTTTGCA
GAGAAAGGGA TCAACATCGC GGCCCAGTAC CTGCAGACGA CTAACGAAAT CGGTTATGTT
GTGATGGAAG TTGACTCAGA CCAAGCCGAG GAAGCTCTGG AGCAGATGAA GACAATCGAT
GGCACTATCC GTACTCGCTT GCTTCATTCA CACTAA
|
|---|
| Protein sequence | MAKHSLDKDK IKILLLEGVH QSAVDVLERA GYTNIEYHKA SLGEEALIAS IKDAHFVGLR
SRTQLSETVL SQADKLVGIG CFCIGTNQVN LKVAEKLGIP VFNAPFSNTR SVAELVLGEI
IMLLRGIPQR NAMAHRGGWL KSASGSFEAR GKTLGVIGYG HIGTQLGILA ETLGMRVIFF
DIEDKLPLGN AQQIHSMQEL MTLADVVSLH VPETPQTKEM IGEAELACMK KGSILINASR
GTVVDIDALA SVLEADKIAG AAIDVFPVEP KSNDDEFISP LRGLDNVILT PHVGGSTQEA
QENIGIEVAG KLAKYSDNGS TMTAVNFPEV SLAQHKDTSR LLHIHHNQPG VLIQINQAFA
EKGINIAAQY LQTTNEIGYV VMEVDSDQAE EALEQMKTID GTIRTRLLHS H
|
|---|
| |