| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3944 |
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| Symbol | |
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| ID | 5611531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4819536 |
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| End bp | 4822214 |
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| Gene Length | 2679 bp |
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| Protein Length | 892 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934898 |
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| Product | endonuclease/exonuclease/phosphatase |
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| Protein accession | YP_001475676 |
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| Protein GI | 157377076 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2374] Predicted extracellular nuclease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000110843 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.791963 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAATG TTAAAAGATT GTCAGTGTTG GCGCTGGCGA TGGCTGCGAC GATGCCGGCA
GTGGCCAATG CCGACATACT GATCAGCGAA TACGTTGAGG GTTCAGGCTG GAACAAGGCC
GTTGAAATAT ATAATTCAGG ATCGGCGACC GTCGATCTGT CCGGTTACTC ACTGGTCTAC
TACTCAAAGG GCGAGACTAC GCCTAAGACC ATCATAGCGC TCGACAGCAC GCTGGCAGCC
AATGCCGTTA AGGTGATCAG TAACAAGGAT TCGAGAAATA CCATTAGCCT GGATTCGGCC
ATCGACTCCC GGTTAGCGAC CATTTACTTC AATGGTGATG ACAAGGTCGG CCTCATCAAA
GATGGCACCT TGGTTGATAT TCTGGGCGAG GTAGGCACAA CGGGTGACTG GGCGAAAGAT
GTCACGATGG AGCGCAAAGC GGATGTGACT GCGGCCAGTG CCGACTATGT TCAGAGCCAG
TGGACGAAAA AAGCTAAGAA CACCTTTAGT GGTCTAGGCG CACGCAGTGG TGATTTCGGT
GGAGGCAGTA CGCCCGTCGA GCCTGCCTTT AGCTGTGTGG GCGAAGCAAT CACGCCCATC
TATGATGTTC AGGGATCGGA GCGCAAGAGT CCGTTAATCG AAGACGGAAA ATACGCGTCG
GCAGACGAGG TGACCATCAG TGGTGTGGTT ACCGCCCGAG GTGAGAGTCT GTTTAAGGGC
TTCTACTTGC AGGAAGTCGT CGGTGATGGT TCACCTGACA CCTCTGATGG CGTTTTTGTT
TACCTGGGAG AGGCGGCGCC CGAGGCTATT CAGCCCGGAG TGCGGGTCTG CGTGCAAGGC
AAGGTCAAAG ACTACTATGG CCTGACTCAG GTCGATATTA AGAAAGACAA GAAGATGGAC
ATAGGTGAGA TTGGTCAGAT GCCATCTCCT GCACCCTTCT ATGTTGCCGA AGGTGAGAGC
TTAACCCAGG CTATGAATCG TTATGAGGGC ATGCAAATTA TGCTCGATGC CGGCAGCGAT
ATGAAGGTCA CTCGTAGCTT CGGTTATGAC TATGATAGCC GTCGTAACAA TATGGTGTTG
TCTCATAAAT CACCTCTGAT GAAGCCGACT CAAGTTTTTG CGCCGCTATC CATAGAGGCG
ATTGAGCTGC AAAGCGCTAA CCGTAGCAAT GAGCTCTATG TCGAGTCAGA CTACAAGGCT
AAAAATGGCG AAGTGCCATA TTTCCCGACT TTTAATGCCG AGACCGGTTA TATTCGCATT
GGCGATCGAG TCAACAATAT GACCGGGATG GTGAGCTACA GCTATGGCGA GCCACGTCTG
GTGGTTACCA ATGAGATAGT GGCCGGTGAT CTTGTGCGGG TCAATGAGCG TAGCGATGCA
CCAGAAGTTG CCTATGTGGG GGATATCCGG GTCGCCAGCT TCAATGTATT GAACCTGTTC
ACCAGTGACA GCGACATCGG CGGTTCACTA AACCCTATGT GTAAAGATCA GGCCGATGCC
AATGCCAGTA AGGGCTGTGG CCGGGGCGCA CACTCGCTGG AAGATTATCA ACTGCAGCGC
ACTAAGATAG TCAATGCCAT CACAGCCATG AATGCCGATG TGATTGGACT GATGGAGATC
GAAAACAATG GTTTTGGTGA GCATAGCTCG ATCCAATACC TGCTAAATTC GCTCAATGCC
GAACTGCCGC AGGAGGATGC TTACGCCTTT ATCGAGCCAG CACCTGCTGA CAAGTATCAG
GGTGAATTTA TCGGCACCGA TGCTATCACT GTGGGGATCT TGTATCGTCC GGCTAAGGTG
CAGCCTGCAG TCGATGCCTT GGTTATCGCG ACACCTGAGC AGCACGCCGA AGCTGGTGTT
GCGACTCGTG GCGAAGGAGC CAAAGTCGAG ACCAGCCCAA GTTATGATAA GTATCAGCGT
CATAGTCTGG CCCAGACCTT TATGATCCAT GGCGAGCCAC TCACGGTAGT GGTTAACCAC
CTTAAGTCTA AAGGTTCTGG CTGTCTGGAG GACTGGATGG AGTTCTCTGA GAATAAGGAT
CCGGCCGATC TTCAGGGCAA GTGTAACGAG TTCCGTGTAT CGGCTGCCAA GGTGCTGGGT
GAATCCCTTG AAGATGTTGA AGGTGGCCTG TTAGTGATTG GTGATATGAA TGCCTATGGG
CAGGAAGATC CTATTGCCGT GCTGACTGAC TATGATGCAT CGACGTCGAA TCGTGATCTG
GTTACTGCGT CCTGGACTAG CCTGAATGGT GAGGTCTACG AGCAAACAGG CAGTGTGATA
GACAAGGGTT ATGGTCTGAT TAACCTCAGT ACCCTCTCCC ATGGTACTGC GACCTTCGGT
TACAGCTACA GTGGCGAGTT GGGTAACCTG GATCATGCCT TAGCCAATGA GGTCGTGGCC
GATAAGCTGG TGGCCATCGA AGACTGGAAT ATCAACTCAC TAGAGTCGAA TCTGTTCGAG
TATTCGAGTA AGTATACCGG TGATTTGGCC AAGTCTGAAA ATGTCTTTAG CTCTTCGGAT
CACGACCCTG TGATCATAGC CCTGACATAC CCAAGGTGTC ACAAGCCAGG AAAAGGCAAA
GGAAAAGGAA TTGGCAAAGG AAAAGGAAGA AATCCATGGC TCGGAGAGAC GTGTGCTAGC
TGGTGTGAGA TTAAGCCATC ACACCCCTTC TGCCGATAG
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| Protein sequence | MDNVKRLSVL ALAMAATMPA VANADILISE YVEGSGWNKA VEIYNSGSAT VDLSGYSLVY
YSKGETTPKT IIALDSTLAA NAVKVISNKD SRNTISLDSA IDSRLATIYF NGDDKVGLIK
DGTLVDILGE VGTTGDWAKD VTMERKADVT AASADYVQSQ WTKKAKNTFS GLGARSGDFG
GGSTPVEPAF SCVGEAITPI YDVQGSERKS PLIEDGKYAS ADEVTISGVV TARGESLFKG
FYLQEVVGDG SPDTSDGVFV YLGEAAPEAI QPGVRVCVQG KVKDYYGLTQ VDIKKDKKMD
IGEIGQMPSP APFYVAEGES LTQAMNRYEG MQIMLDAGSD MKVTRSFGYD YDSRRNNMVL
SHKSPLMKPT QVFAPLSIEA IELQSANRSN ELYVESDYKA KNGEVPYFPT FNAETGYIRI
GDRVNNMTGM VSYSYGEPRL VVTNEIVAGD LVRVNERSDA PEVAYVGDIR VASFNVLNLF
TSDSDIGGSL NPMCKDQADA NASKGCGRGA HSLEDYQLQR TKIVNAITAM NADVIGLMEI
ENNGFGEHSS IQYLLNSLNA ELPQEDAYAF IEPAPADKYQ GEFIGTDAIT VGILYRPAKV
QPAVDALVIA TPEQHAEAGV ATRGEGAKVE TSPSYDKYQR HSLAQTFMIH GEPLTVVVNH
LKSKGSGCLE DWMEFSENKD PADLQGKCNE FRVSAAKVLG ESLEDVEGGL LVIGDMNAYG
QEDPIAVLTD YDASTSNRDL VTASWTSLNG EVYEQTGSVI DKGYGLINLS TLSHGTATFG
YSYSGELGNL DHALANEVVA DKLVAIEDWN INSLESNLFE YSSKYTGDLA KSENVFSSSD
HDPVIIALTY PRCHKPGKGK GKGIGKGKGR NPWLGETCAS WCEIKPSHPF CR
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