Gene Ssed_3943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3943 
Symbol 
ID5612979 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4816395 
End bp4819052 
Gene Length2658 bp 
Protein Length885 aa 
Translation table11 
GC content48% 
IMG OID640934897 
Productendonuclease/exonuclease/phosphatase 
Protein accessionYP_001475675 
Protein GI157377075 
COG category[R] General function prediction only 
COG ID[COG2374] Predicted extracellular nuclease 
TIGRFAM ID[TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.439448 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAATG TTAAAAAATT GTCAGTGCTG GCACTGTCAA TCGCTGCGGC TCTGCCTATG 
ATGGCGAGCG CAGATGTCAT GATTAGTGAA TATGTAGAAG GCAGCAGCAA TAATAAAGCT
ATCGAGCTGT ATAACACGGG TGATGCATCC GTCGATCTGG CCGGTTATAA GCTGGTACGC
TTCAAAGATG GTGCGGAAAC ATCATTAGAT CTGGTTGCCT TAGATGGTCA GGCGATCGCT
TCCAAATCTG TCAAAGTCAT CACTCATCCA AGCGCCACTA TCACTCTGGG CGCAGGTGTC
GACTCGATGA CTGGCAACTT ATACTTCAAT GGTGGTGACG CGGTTGCCCT CTTGAAAGAC
GGTGTTATCG TCGATGTTAT CGGTACCATT CCTACGCCGG ATGGCTGGGG ATACGATAAG
ACATTTCAAC GTAACGACGA TGTGACTGCG GCTAAAACCG TGTTTGATGC GGCGCAGTGG
ACTGAGCTTG CAAAGGATAC CTTCAGTGGT TTAGGTGTTC GCTCTGGTGA GTTTGTTGGC
GGTGAAGTTG AACCCGTTGA GCCTTATGCC TGTATCGGCG ATGTCACCGC GATCTATGAT
ATTCAGGGTG ATGGTCAGTA CAGTCCTCTG ACATCGTCTT CATATCCCTA TGAATCTGCC
GATGCGGTTA TTGTTAAAGG TGTGGTGACC GCTCGTCTGG ATAAGAAGAA AGGCTTCTTT
ATTCAAGAGG TAGTCGGTGA TGGTTCGGCT GCAACTTCCG ATGGTATCTT TGTGTCACTG
GGGGCTGTAG CACCGGCAGA AATCGTACCG GGTAAGCTAG TCTGTTTAGA AGGTAAAGTT
AAAGAGAACT ATAAGCAGAC TGAAATCGTA GGTAACCCTG ATAATCTGGC TATTACCGGA
GATGCAGAGC TTCCTGCTGT GGTAGCGCTT GTTATCAATG ACGGTGAGAC CTTAGCCGAT
GCGTTAGAGC GCCACGAAGG GATGAAGATT AAACTCGACT CCGGCAGTGA AATGAAGGTC
ACCAGCCCAT ATGGGTATGA TGGATATGGC AATACCATGT CACTCTCTCA TAAGGCTCCT
CTGTTTAAGG CGACTCAGGT TCACGCTGCA GGTACTGAAG AGGCTGCGGC AATAGCGTCG
GCGAACGCTA AGAATAAGCT GGTGATTGAA ACGGGTCTAT CTGCACCTAA TGGTCACATT
GCTTATTTCC CTACTTTCAA TGCCGAAACC GGATATATGC GTATCGGCGA TCAGCTGAAC
AATATAGAAG GCATGGTTAA CTACAGCTAT AACGCCTATC GTCTATATGC GACCAATGAG
ATCGTTGCCG GTGACTTCAT CCGCGAAAAT GATCGAGCAG GCGCGCCTGA AATAGCGACT
AAAGGTGATA TTCGTGTCGC CAGCTTTAAC GTGTTGAACT TGTTCACCAG TGATAGCGAT
ATCGGTGGGC CGTTAAATGC GACCTGTGAA GATCAGGCCG ACGCTGATGC GAGTAGAGGT
TGTGGTCGTG GTGCACACTC TTTGGATGAA TATCTGCTTC AGCGTACTAA GATTGTTAAT
GCACTCAAAG AGATGGATGC TGACATCGTA GGCTTGATGG AAATTGAAAA TAATGGCTTT
AGCGAGTCAA GCTCAATTCA GTATCTGCTG AATTCGATTA ATGCCGAGCT GCCAGCCATC
GATGCCTATA AGTTTATCGA AATCGCCGAT GCCGATAAGT ACCAGGGTGA GTTCGTCGGT
AGTGACGCGA TCATGGTCGG TATCCTTTAC CGTCCTAATA AGGTGAAGCC AGCCGGTGAC
GCATTCGTTA TCGCTACCCC CGAGCAGCAT GCGGCGGAAG GTGTTGCGAC TCGCGGAGAG
GGTGATGATG TTGAAACCAG CCCAAGCTAT AACAAGTATC AACGTCATAG CCTGGCTCAG
ACGTTCCAGA TCCATGATGA GAAGTTAACT ATTGTCGTTA ACCATCTAAA GTCTAAAGGC
TCTGGTTGTC TGGAAGATTG GTTGGAGTTC TCTGAGAGCA AAGACCCAGC CGATCTGCAA
GGCAAGTGTA ATGAGTTCCG TGTGTCGGCC GCTAAGGCTA TCGGTGATTC ACTAAAGGAT
GTCGAGGGTG ATCTGTTGGT TATCGGTGAT TTGAATGCCT ACGGCATGGA AGATCCTGTT
CGCGTACTAA CCGATTATGA TGCGGCGACG TCGACACGCG ACGTAGTAAC TGCATCTTGG
ACAACGCTCA ATGGTGAAAC CTATGAGCAA GAGGGAAGTG TGATTGAGAA AGGTTATGGC
CTAATCAACC TAAACACTCA GGCTCATGGA GCGGAAACCT ATAGTTATAG TTACGGCGGT
GAGTTAGGTA ACCTGGATCA CGCACTCGGC AATGCGAGCG CCGCTGCAAG ACTGGTCGAT
ATTCAGGATT GGCATATCAA CTCAGTTGAA TCTGGCTTGT TTGAATATTC GGGCAAGTAC
ACGGGCGACT TGGTTAAGTC TGAGAATGTC TATAGCTCTT CGGATCACGA CCCTGTGATT
GTTGCTCTGA ATTATCCTGC ACCAGTAGAC CCTGTTGAAC CGGTTGAACC TGAAAAAGAA
GATGATGATG GTGGTTCTTT AGGTTTCTTA GGTCTGGCTA TGCTTTCACT ATTTGGTTTG
CGTCGTCGCA TTCGCTAA
 
Protein sequence
MDNVKKLSVL ALSIAAALPM MASADVMISE YVEGSSNNKA IELYNTGDAS VDLAGYKLVR 
FKDGAETSLD LVALDGQAIA SKSVKVITHP SATITLGAGV DSMTGNLYFN GGDAVALLKD
GVIVDVIGTI PTPDGWGYDK TFQRNDDVTA AKTVFDAAQW TELAKDTFSG LGVRSGEFVG
GEVEPVEPYA CIGDVTAIYD IQGDGQYSPL TSSSYPYESA DAVIVKGVVT ARLDKKKGFF
IQEVVGDGSA ATSDGIFVSL GAVAPAEIVP GKLVCLEGKV KENYKQTEIV GNPDNLAITG
DAELPAVVAL VINDGETLAD ALERHEGMKI KLDSGSEMKV TSPYGYDGYG NTMSLSHKAP
LFKATQVHAA GTEEAAAIAS ANAKNKLVIE TGLSAPNGHI AYFPTFNAET GYMRIGDQLN
NIEGMVNYSY NAYRLYATNE IVAGDFIREN DRAGAPEIAT KGDIRVASFN VLNLFTSDSD
IGGPLNATCE DQADADASRG CGRGAHSLDE YLLQRTKIVN ALKEMDADIV GLMEIENNGF
SESSSIQYLL NSINAELPAI DAYKFIEIAD ADKYQGEFVG SDAIMVGILY RPNKVKPAGD
AFVIATPEQH AAEGVATRGE GDDVETSPSY NKYQRHSLAQ TFQIHDEKLT IVVNHLKSKG
SGCLEDWLEF SESKDPADLQ GKCNEFRVSA AKAIGDSLKD VEGDLLVIGD LNAYGMEDPV
RVLTDYDAAT STRDVVTASW TTLNGETYEQ EGSVIEKGYG LINLNTQAHG AETYSYSYGG
ELGNLDHALG NASAAARLVD IQDWHINSVE SGLFEYSGKY TGDLVKSENV YSSSDHDPVI
VALNYPAPVD PVEPVEPEKE DDDGGSLGFL GLAMLSLFGL RRRIR