| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3943 |
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| Symbol | |
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| ID | 5612979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4816395 |
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| End bp | 4819052 |
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| Gene Length | 2658 bp |
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| Protein Length | 885 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934897 |
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| Product | endonuclease/exonuclease/phosphatase |
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| Protein accession | YP_001475675 |
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| Protein GI | 157377075 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2374] Predicted extracellular nuclease |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.439448 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAATG TTAAAAAATT GTCAGTGCTG GCACTGTCAA TCGCTGCGGC TCTGCCTATG
ATGGCGAGCG CAGATGTCAT GATTAGTGAA TATGTAGAAG GCAGCAGCAA TAATAAAGCT
ATCGAGCTGT ATAACACGGG TGATGCATCC GTCGATCTGG CCGGTTATAA GCTGGTACGC
TTCAAAGATG GTGCGGAAAC ATCATTAGAT CTGGTTGCCT TAGATGGTCA GGCGATCGCT
TCCAAATCTG TCAAAGTCAT CACTCATCCA AGCGCCACTA TCACTCTGGG CGCAGGTGTC
GACTCGATGA CTGGCAACTT ATACTTCAAT GGTGGTGACG CGGTTGCCCT CTTGAAAGAC
GGTGTTATCG TCGATGTTAT CGGTACCATT CCTACGCCGG ATGGCTGGGG ATACGATAAG
ACATTTCAAC GTAACGACGA TGTGACTGCG GCTAAAACCG TGTTTGATGC GGCGCAGTGG
ACTGAGCTTG CAAAGGATAC CTTCAGTGGT TTAGGTGTTC GCTCTGGTGA GTTTGTTGGC
GGTGAAGTTG AACCCGTTGA GCCTTATGCC TGTATCGGCG ATGTCACCGC GATCTATGAT
ATTCAGGGTG ATGGTCAGTA CAGTCCTCTG ACATCGTCTT CATATCCCTA TGAATCTGCC
GATGCGGTTA TTGTTAAAGG TGTGGTGACC GCTCGTCTGG ATAAGAAGAA AGGCTTCTTT
ATTCAAGAGG TAGTCGGTGA TGGTTCGGCT GCAACTTCCG ATGGTATCTT TGTGTCACTG
GGGGCTGTAG CACCGGCAGA AATCGTACCG GGTAAGCTAG TCTGTTTAGA AGGTAAAGTT
AAAGAGAACT ATAAGCAGAC TGAAATCGTA GGTAACCCTG ATAATCTGGC TATTACCGGA
GATGCAGAGC TTCCTGCTGT GGTAGCGCTT GTTATCAATG ACGGTGAGAC CTTAGCCGAT
GCGTTAGAGC GCCACGAAGG GATGAAGATT AAACTCGACT CCGGCAGTGA AATGAAGGTC
ACCAGCCCAT ATGGGTATGA TGGATATGGC AATACCATGT CACTCTCTCA TAAGGCTCCT
CTGTTTAAGG CGACTCAGGT TCACGCTGCA GGTACTGAAG AGGCTGCGGC AATAGCGTCG
GCGAACGCTA AGAATAAGCT GGTGATTGAA ACGGGTCTAT CTGCACCTAA TGGTCACATT
GCTTATTTCC CTACTTTCAA TGCCGAAACC GGATATATGC GTATCGGCGA TCAGCTGAAC
AATATAGAAG GCATGGTTAA CTACAGCTAT AACGCCTATC GTCTATATGC GACCAATGAG
ATCGTTGCCG GTGACTTCAT CCGCGAAAAT GATCGAGCAG GCGCGCCTGA AATAGCGACT
AAAGGTGATA TTCGTGTCGC CAGCTTTAAC GTGTTGAACT TGTTCACCAG TGATAGCGAT
ATCGGTGGGC CGTTAAATGC GACCTGTGAA GATCAGGCCG ACGCTGATGC GAGTAGAGGT
TGTGGTCGTG GTGCACACTC TTTGGATGAA TATCTGCTTC AGCGTACTAA GATTGTTAAT
GCACTCAAAG AGATGGATGC TGACATCGTA GGCTTGATGG AAATTGAAAA TAATGGCTTT
AGCGAGTCAA GCTCAATTCA GTATCTGCTG AATTCGATTA ATGCCGAGCT GCCAGCCATC
GATGCCTATA AGTTTATCGA AATCGCCGAT GCCGATAAGT ACCAGGGTGA GTTCGTCGGT
AGTGACGCGA TCATGGTCGG TATCCTTTAC CGTCCTAATA AGGTGAAGCC AGCCGGTGAC
GCATTCGTTA TCGCTACCCC CGAGCAGCAT GCGGCGGAAG GTGTTGCGAC TCGCGGAGAG
GGTGATGATG TTGAAACCAG CCCAAGCTAT AACAAGTATC AACGTCATAG CCTGGCTCAG
ACGTTCCAGA TCCATGATGA GAAGTTAACT ATTGTCGTTA ACCATCTAAA GTCTAAAGGC
TCTGGTTGTC TGGAAGATTG GTTGGAGTTC TCTGAGAGCA AAGACCCAGC CGATCTGCAA
GGCAAGTGTA ATGAGTTCCG TGTGTCGGCC GCTAAGGCTA TCGGTGATTC ACTAAAGGAT
GTCGAGGGTG ATCTGTTGGT TATCGGTGAT TTGAATGCCT ACGGCATGGA AGATCCTGTT
CGCGTACTAA CCGATTATGA TGCGGCGACG TCGACACGCG ACGTAGTAAC TGCATCTTGG
ACAACGCTCA ATGGTGAAAC CTATGAGCAA GAGGGAAGTG TGATTGAGAA AGGTTATGGC
CTAATCAACC TAAACACTCA GGCTCATGGA GCGGAAACCT ATAGTTATAG TTACGGCGGT
GAGTTAGGTA ACCTGGATCA CGCACTCGGC AATGCGAGCG CCGCTGCAAG ACTGGTCGAT
ATTCAGGATT GGCATATCAA CTCAGTTGAA TCTGGCTTGT TTGAATATTC GGGCAAGTAC
ACGGGCGACT TGGTTAAGTC TGAGAATGTC TATAGCTCTT CGGATCACGA CCCTGTGATT
GTTGCTCTGA ATTATCCTGC ACCAGTAGAC CCTGTTGAAC CGGTTGAACC TGAAAAAGAA
GATGATGATG GTGGTTCTTT AGGTTTCTTA GGTCTGGCTA TGCTTTCACT ATTTGGTTTG
CGTCGTCGCA TTCGCTAA
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| Protein sequence | MDNVKKLSVL ALSIAAALPM MASADVMISE YVEGSSNNKA IELYNTGDAS VDLAGYKLVR
FKDGAETSLD LVALDGQAIA SKSVKVITHP SATITLGAGV DSMTGNLYFN GGDAVALLKD
GVIVDVIGTI PTPDGWGYDK TFQRNDDVTA AKTVFDAAQW TELAKDTFSG LGVRSGEFVG
GEVEPVEPYA CIGDVTAIYD IQGDGQYSPL TSSSYPYESA DAVIVKGVVT ARLDKKKGFF
IQEVVGDGSA ATSDGIFVSL GAVAPAEIVP GKLVCLEGKV KENYKQTEIV GNPDNLAITG
DAELPAVVAL VINDGETLAD ALERHEGMKI KLDSGSEMKV TSPYGYDGYG NTMSLSHKAP
LFKATQVHAA GTEEAAAIAS ANAKNKLVIE TGLSAPNGHI AYFPTFNAET GYMRIGDQLN
NIEGMVNYSY NAYRLYATNE IVAGDFIREN DRAGAPEIAT KGDIRVASFN VLNLFTSDSD
IGGPLNATCE DQADADASRG CGRGAHSLDE YLLQRTKIVN ALKEMDADIV GLMEIENNGF
SESSSIQYLL NSINAELPAI DAYKFIEIAD ADKYQGEFVG SDAIMVGILY RPNKVKPAGD
AFVIATPEQH AAEGVATRGE GDDVETSPSY NKYQRHSLAQ TFQIHDEKLT IVVNHLKSKG
SGCLEDWLEF SESKDPADLQ GKCNEFRVSA AKAIGDSLKD VEGDLLVIGD LNAYGMEDPV
RVLTDYDAAT STRDVVTASW TTLNGETYEQ EGSVIEKGYG LINLNTQAHG AETYSYSYGG
ELGNLDHALG NASAAARLVD IQDWHINSVE SGLFEYSGKY TGDLVKSENV YSSSDHDPVI
VALNYPAPVD PVEPVEPEKE DDDGGSLGFL GLAMLSLFGL RRRIR
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