Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3940 |
Symbol | |
ID | 5612976 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4812899 |
End bp | 4814380 |
Gene Length | 1482 bp |
Protein Length | 493 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640934894 |
Product | catalase |
Protein accession | YP_001475672 |
Protein GI | 157377072 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0753] Catalase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.109711 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.357218 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAGC AAAATATGAC AGAGCAAACC AACTACCTGA CCAGCCAAAA TGGCGCGCCG GTTGCTGATG ATCAAAACTC ATTGACGGCG GGAGAGCGTG GACCTGTACT GCTGCAAGAT TTTCATCTGT TAGAAAAACT CGCTCACTTC AATCGCGAAC GAATTCCGGA GCGAGTGGTC CATGCGAAAG GTACAGGGGT ATATGGCACT TTTACCGTGA CAAAAGATTT GAGTGCGTAC ACGATTGCGG ATCACTTTAA TGAAGTGGGC AAACAGACTG AGACCTTCGT GCGTTTCTCT ACCGTAGGCG GTGAGATGGG ATCGGCCGAT GCCGAGCGAG ATCCCCGGGG CTTCGGTCTG CGTTTTTACA CCGCTCGTGG TAATCACGAC ATAGTCGGAA ATAACACGCC AACCTTTTTC CTGCGTGACG GGATTAAGTT TCCGGACTTT ATCCATACCC AAAAGCGTAA CCCTCAGACA AACCTGAAAG ATCCGCAAGC AATGTGGGAC TTCTGGGCAT TGAACCCCGA GGCTTTACAT CAGGTCACTG TGCTGATGTC TGATCGCGGG ATCCCGGCTA ACTATCGTCA GATGAATGGC TATGGTTCGC ACACCTACTC GCTCTGGAAT GCGAAGGGTG AACGCTTCTG GGTTAAATTC CACTTTAAGA CCAAGCAGGG AATCGCTAAC TTGACCCCTG AGCAGGCCGA TATTTTAAAG GGTATCGATC CCGACTCATC ACAGCGAGAC ATGGTCGCGG CGATAAACGA TGGCAACTTC CCACGTTGGT CGGTGAAAGT ACAGATCATG CCTGAGGCTG ATGCGAATAC CTATTCTATT AACCCATTCG ACTTGACCAA GGTATGGCCA CATGGGGATT ACCCGCTGAT CGAAATTGGA GAGCTGGAAC TCAACCGTAT GCCGGAAAAT TACTTTGCCG AAGTCGAGCA GGTAGCATTA GCACCAAGCA ATCTGGTTCC GGGGGTTGGC GCCTCACCGG ATAAGATGTT GCAAGCCCGA TTATTCGCAT ATGCCGATGC TCAGCGCTAC CGTATCGGGG CTAACTATAA CCAGCTACCG GTAAATTGCC CTCATGGGAC TAAGGCAAAC CATCATCAAA GAGCCGGAGC GATGGCTGGC ACTCAGTGTC CTTATCATGG CAGTCAGACC GGCGGTGATG CTTCTGCAAA CTATGGTCCG AACAGCCGCA TTGAAGGCTT GAGCGACACC TCTCAGTTTA TCGAGCCACC TTTGCGTCTC GATGGCGAGG CCGACAGATA CAGTCGTTAT AACCAAGATG ATTTTACTCA GGCGGGTAAC CTGTATCGCA TTCTTTCCGA AGAGGAAAAA GCGCGCTTGA TCAACAATAT CTGCGGAACC CTGAGTCAGA CCACACTCGA TGTGCAGCAG ACCATGGTCG AACACTTCAC TAAAGCCGAT GCCGACTACG GTCAGCGCAT CAAACAGGCT TTAGGTTTGT AA
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Protein sequence | MNKQNMTEQT NYLTSQNGAP VADDQNSLTA GERGPVLLQD FHLLEKLAHF NRERIPERVV HAKGTGVYGT FTVTKDLSAY TIADHFNEVG KQTETFVRFS TVGGEMGSAD AERDPRGFGL RFYTARGNHD IVGNNTPTFF LRDGIKFPDF IHTQKRNPQT NLKDPQAMWD FWALNPEALH QVTVLMSDRG IPANYRQMNG YGSHTYSLWN AKGERFWVKF HFKTKQGIAN LTPEQADILK GIDPDSSQRD MVAAINDGNF PRWSVKVQIM PEADANTYSI NPFDLTKVWP HGDYPLIEIG ELELNRMPEN YFAEVEQVAL APSNLVPGVG ASPDKMLQAR LFAYADAQRY RIGANYNQLP VNCPHGTKAN HHQRAGAMAG TQCPYHGSQT GGDASANYGP NSRIEGLSDT SQFIEPPLRL DGEADRYSRY NQDDFTQAGN LYRILSEEEK ARLINNICGT LSQTTLDVQQ TMVEHFTKAD ADYGQRIKQA LGL
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