Gene Ssed_3940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3940 
Symbol 
ID5612976 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4812899 
End bp4814380 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content51% 
IMG OID640934894 
Productcatalase 
Protein accessionYP_001475672 
Protein GI157377072 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0753] Catalase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.109711 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.357218 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAGC AAAATATGAC AGAGCAAACC AACTACCTGA CCAGCCAAAA TGGCGCGCCG 
GTTGCTGATG ATCAAAACTC ATTGACGGCG GGAGAGCGTG GACCTGTACT GCTGCAAGAT
TTTCATCTGT TAGAAAAACT CGCTCACTTC AATCGCGAAC GAATTCCGGA GCGAGTGGTC
CATGCGAAAG GTACAGGGGT ATATGGCACT TTTACCGTGA CAAAAGATTT GAGTGCGTAC
ACGATTGCGG ATCACTTTAA TGAAGTGGGC AAACAGACTG AGACCTTCGT GCGTTTCTCT
ACCGTAGGCG GTGAGATGGG ATCGGCCGAT GCCGAGCGAG ATCCCCGGGG CTTCGGTCTG
CGTTTTTACA CCGCTCGTGG TAATCACGAC ATAGTCGGAA ATAACACGCC AACCTTTTTC
CTGCGTGACG GGATTAAGTT TCCGGACTTT ATCCATACCC AAAAGCGTAA CCCTCAGACA
AACCTGAAAG ATCCGCAAGC AATGTGGGAC TTCTGGGCAT TGAACCCCGA GGCTTTACAT
CAGGTCACTG TGCTGATGTC TGATCGCGGG ATCCCGGCTA ACTATCGTCA GATGAATGGC
TATGGTTCGC ACACCTACTC GCTCTGGAAT GCGAAGGGTG AACGCTTCTG GGTTAAATTC
CACTTTAAGA CCAAGCAGGG AATCGCTAAC TTGACCCCTG AGCAGGCCGA TATTTTAAAG
GGTATCGATC CCGACTCATC ACAGCGAGAC ATGGTCGCGG CGATAAACGA TGGCAACTTC
CCACGTTGGT CGGTGAAAGT ACAGATCATG CCTGAGGCTG ATGCGAATAC CTATTCTATT
AACCCATTCG ACTTGACCAA GGTATGGCCA CATGGGGATT ACCCGCTGAT CGAAATTGGA
GAGCTGGAAC TCAACCGTAT GCCGGAAAAT TACTTTGCCG AAGTCGAGCA GGTAGCATTA
GCACCAAGCA ATCTGGTTCC GGGGGTTGGC GCCTCACCGG ATAAGATGTT GCAAGCCCGA
TTATTCGCAT ATGCCGATGC TCAGCGCTAC CGTATCGGGG CTAACTATAA CCAGCTACCG
GTAAATTGCC CTCATGGGAC TAAGGCAAAC CATCATCAAA GAGCCGGAGC GATGGCTGGC
ACTCAGTGTC CTTATCATGG CAGTCAGACC GGCGGTGATG CTTCTGCAAA CTATGGTCCG
AACAGCCGCA TTGAAGGCTT GAGCGACACC TCTCAGTTTA TCGAGCCACC TTTGCGTCTC
GATGGCGAGG CCGACAGATA CAGTCGTTAT AACCAAGATG ATTTTACTCA GGCGGGTAAC
CTGTATCGCA TTCTTTCCGA AGAGGAAAAA GCGCGCTTGA TCAACAATAT CTGCGGAACC
CTGAGTCAGA CCACACTCGA TGTGCAGCAG ACCATGGTCG AACACTTCAC TAAAGCCGAT
GCCGACTACG GTCAGCGCAT CAAACAGGCT TTAGGTTTGT AA
 
Protein sequence
MNKQNMTEQT NYLTSQNGAP VADDQNSLTA GERGPVLLQD FHLLEKLAHF NRERIPERVV 
HAKGTGVYGT FTVTKDLSAY TIADHFNEVG KQTETFVRFS TVGGEMGSAD AERDPRGFGL
RFYTARGNHD IVGNNTPTFF LRDGIKFPDF IHTQKRNPQT NLKDPQAMWD FWALNPEALH
QVTVLMSDRG IPANYRQMNG YGSHTYSLWN AKGERFWVKF HFKTKQGIAN LTPEQADILK
GIDPDSSQRD MVAAINDGNF PRWSVKVQIM PEADANTYSI NPFDLTKVWP HGDYPLIEIG
ELELNRMPEN YFAEVEQVAL APSNLVPGVG ASPDKMLQAR LFAYADAQRY RIGANYNQLP
VNCPHGTKAN HHQRAGAMAG TQCPYHGSQT GGDASANYGP NSRIEGLSDT SQFIEPPLRL
DGEADRYSRY NQDDFTQAGN LYRILSEEEK ARLINNICGT LSQTTLDVQQ TMVEHFTKAD
ADYGQRIKQA LGL