Gene Ssed_3939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3939 
Symbol 
ID5613445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand+ 
Start bp4812222 
End bp4812836 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content48% 
IMG OID640934893 
Producthypothetical protein 
Protein accessionYP_001475671 
Protein GI157377071 
COG category[S] Function unknown 
COG ID[COG2119] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.143914 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.560117 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAACTGT GCTCGGAATT TTTTGCCCCC CTAAAGGAAA AACATCAAGT GGAAGCTCTA 
CTCGCCTCAA CTCTTACCGT TGCCATTGCC GAAATCGGTG ATAAAACTCA ACTGCTCGCC 
CTCATTCTTG CTGCCAGATT CAGTCACCTC AGCGGAGGGA AAACGGCCAT CATTCTTGGC 
ATATTTCTTT CTACGTTAGT GAATCATTTT GCCTCTGCCT GGTTTGGCCA ATGGGCCATA 
GGTTTGATCA CTCCAGAATT AGCCAGATAC CTGATTGCGG GTTCATTTTT TGCAATCGCA 
CTCTGGGTTC TCGTTCCCGA TAAGATGGAT GAAGAGCAGA GCCGTTTCTA TAAGATGGGC 
CCCTTTGTCG CGACCTTTAT TCTGTTTTTT ATCGCAGAGA TGGGAGACAA GACTCAAATT 
GCCACCGTGG TGCTAGCGGC AAAATATGAT GCTCTGGCTA TGGTGGTTAT GGGGACGACA 
TTAGGCATGT TGATCGCCAA TGTTCCCGTG GTCATTGCCG GTCACTTCAG TGCGGAAAAG 
CTGCCTATGA CCCTGATACA CAGAGGTTGT GCGGTGCTAT TTGCACTGCT GGGTGTATTG 
ACACTGATAT TCTAG
 
Protein sequence
MELCSEFFAP LKEKHQVEAL LASTLTVAIA EIGDKTQLLA LILAARFSHL SGGKTAIILG 
IFLSTLVNHF ASAWFGQWAI GLITPELARY LIAGSFFAIA LWVLVPDKMD EEQSRFYKMG 
PFVATFILFF IAEMGDKTQI ATVVLAAKYD ALAMVVMGTT LGMLIANVPV VIAGHFSAEK 
LPMTLIHRGC AVLFALLGVL TLIF