| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3938 |
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| Symbol | |
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| ID | 5613444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4810365 |
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| End bp | 4811543 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934892 |
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| Product | aromatic amino acid permease |
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| Protein accession | YP_001475670 |
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| Protein GI | 157377070 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0814] Amino acid permeases |
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| TIGRFAM ID | [TIGR00837] aromatic amino acid transport protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.176846 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.472237 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGGCT CTATCGCTAT CGTTGCTGGT ACCGCCATCG GTGCCGGAAT GTTAGCGCTG
CCTCTGGCCA CCGCTGCTCT TGGGATCATT CCTGCCATAC TCTTACTCGT TCTCATTTGG
GGCGTCTCTG CCTACACCTC ACTACTGATG CTGGAGATTA ATCTTCGTAC CGGCGTGGGT
GATAATGTTC ATGCCATTAC CGGTAAAGTT TTGGGTAAGA GAGGTCAGCT TGTTCAGGGG
GCTTCCTTCT TAAGCCTACT GTTTGCCCTG ACTGCGGCAT ATCTAACCGG TGGTTCATCT
CTATTGGTTC TGAAAGCCGA AACCATGTTC GATGTCGCGT TAGATAACCA AGCGGCAGTG
ATCTTATTCA CTCTGACGCT TGGACTGTTT GCCGCCTTCG GTGTGGCCTG GGTCGATAAG
GTTTCCCGTA TCCTCTTCTC TTTGATGATT GCGCTTTTGG TCGTCACCGT TGGATTCTTA
ATGCCTGAAG TTAGCCCATC TAAGATGGCG GTTGCCGCGA TGGAAAGGGG TAACTTCGAT
GTCTGGATGG CAGCTATCCC TGTGGTATTT ACCTCATTTG GTTTTCATGT CTGTATCGCA
ACCTTAGTGC GCTATCTTGA CGGCGATACT ATGACACTGC GTAAGGTGCT CTTGATTGGC
TCGACGCTGC CTCTGCTATG TTATGTCTTA TGGTTATTGG TAACACTGGG TACCGTTGGC
GGTGAAGCCA TTCATGGGTT TGGTGGTTCA TTGCCGGCAC TGGTGAGTTC TCTGCAGGAT
ATTGCGGCTC AGCCATGGGT GAGCAGGTGT ATCTCGCTAT TTGCAGACTT TGCCTTAGTG
ACCTCTTTCC TCGGTGTGAC CCTAAGCCTA TATGACTTCA TCGGAGAGTT AACCCGCGCC
AGACCTACCA TTGCGGGTCG TATTCAAACC TGGTTGATCA CCTTCATCCC TCCGGTCTTG
TGTGCACTCT ATATTCCGGA AGGATTCGTT GCGGTATTGG GTTTCGCGGC AATTCCTTTG
GTCGTGATGA TCATCTTCCT GCCAATAGTG ATGGCGTTAA AGCAACGCCC ACAGGCAACA
GAGAATGGGT ATCAGGTAGC GGGTGGAACT CCTGCGCTAG CCATAGCCGG CGTGTTAGGC
ACAGTGATTA TTGCCTCACA ACTTTGGGTC GCTCTATAG
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| Protein sequence | MLGSIAIVAG TAIGAGMLAL PLATAALGII PAILLLVLIW GVSAYTSLLM LEINLRTGVG
DNVHAITGKV LGKRGQLVQG ASFLSLLFAL TAAYLTGGSS LLVLKAETMF DVALDNQAAV
ILFTLTLGLF AAFGVAWVDK VSRILFSLMI ALLVVTVGFL MPEVSPSKMA VAAMERGNFD
VWMAAIPVVF TSFGFHVCIA TLVRYLDGDT MTLRKVLLIG STLPLLCYVL WLLVTLGTVG
GEAIHGFGGS LPALVSSLQD IAAQPWVSRC ISLFADFALV TSFLGVTLSL YDFIGELTRA
RPTIAGRIQT WLITFIPPVL CALYIPEGFV AVLGFAAIPL VVMIIFLPIV MALKQRPQAT
ENGYQVAGGT PALAIAGVLG TVIIASQLWV AL
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