| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3932 |
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| Symbol | |
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| ID | 5612915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4802900 |
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| End bp | 4803688 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934886 |
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| Product | amino acid ABC transporter periplasmic protein |
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| Protein accession | YP_001475664 |
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| Protein GI | 157377064 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA CCATCATAGC GTTAATCCTA TTCTTGTGTG GCAGCTTACA TCTTCAGGCG
AGCTCTGATG ATGCGCTCGA TATCGCGATA CTGGAATATC CCCCCTATGA GTATACCGAT
AACGGCCAGT TTCATGGCGT ATCGGTGCGT CTGGTCGAAG CCGTCTTTCA GCGTATAGAG
CAACCCATTA AGTTACAGGT ATTACCCTGG TCCAGAGCGT TAAAATTTAT GAAAGAGGGA
AGAATTGATG GCTTAATCGA AGTCCTGGTT GTCCCCGAAA GACTGGCCTA TATCGATTTT
AGCCAGGTAG TATTAATGGA GGAGAGGATA ACCTTGTTTG TCGTCGAAGA CTCCCCAATA
ACCTTCGATG GAGATCTGAC GGCACTGAGA GAGTATCATT TTGGCGCCCG GCAAGATTTC
AGTTATGGCA CAATTTTCGA TGAGGCGGTT GCCAACAGGG TCATTAAGCA TATGAGTATC
GATGTTGAGT TTGATACCCT GCTGCTCAAG CTATGTACCG GTGATATCGA TATTCTTATC
GGTGAAAAAA ATACCATTCA CTATGTTTCC AGCAGGATCA AGGTGCTGCA AAATACCTCT
ATTAAACGTT GTAAAAATAT CAAGCGATTA TCACCAGTTA TTCAATCCAC ATCCGCGTAT
ATGGGCTTCT CTAAGGTGAA TAAACTCACT CATATCAGGG ATAGATTTGA TGAGGCCCTG
ACTGAGATGA AGCGAGATGG CAGCTATGAG AAGATTGTCG AAGCCTGGTG GAGTGAGCAT
AGTTTATAA
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| Protein sequence | MKKTIIALIL FLCGSLHLQA SSDDALDIAI LEYPPYEYTD NGQFHGVSVR LVEAVFQRIE
QPIKLQVLPW SRALKFMKEG RIDGLIEVLV VPERLAYIDF SQVVLMEERI TLFVVEDSPI
TFDGDLTALR EYHFGARQDF SYGTIFDEAV ANRVIKHMSI DVEFDTLLLK LCTGDIDILI
GEKNTIHYVS SRIKVLQNTS IKRCKNIKRL SPVIQSTSAY MGFSKVNKLT HIRDRFDEAL
TEMKRDGSYE KIVEAWWSEH SL
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