Gene Ssed_3918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3918 
Symbol 
ID5611742 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4786721 
End bp4787425 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content50% 
IMG OID640934872 
Producthypothetical protein 
Protein accessionYP_001475650 
Protein GI157377050 
COG category[S] Function unknown 
COG ID[COG2968] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAT CACTATTAGC AGCAATCATA TCCGGCGGTC TTATTCTGGC TGCGCCACAG 
CTTCAAGCCA GTGAGCTCAG CTTCCCACAC CTTGAGACAA TAGGCGTAAG TGAGCTGGCT
GTCGAAGCGG ATATGGCCGA GATAAATGTG GCCGTCGTTA TCAGAGATAA AACCGCCAAA
GGTGCGAAAA ACGCCTCAGA TAAGGCCGTT GCAAAATTTA TCGCCAGGCT GAAAAAAGCA
GGCATAGAGC GCTCGCTTAT CCAGAGTGCA AACCTGAATC TACAGCCGCA ATACCACTAT
GAGAAAGATA AGCCTGCCCA ATTGACCGGT TACATGGCCA GTCGCCGCCT CACCGTCACA
GTGCAAGACC TGACCCGTCT CAATGCCATC TTAGACTCGG CATTAGAAGA GGGGATCAAT
CGGGTCAATA ACATCGCACT GAAATCCAGT AAGGAAGATG AATATGTGGC TAAGGCCAGA
CTCGCAGCCA TCAAAGATGC TCAGGAAAAA GCTCGGCTAC TCGCCGAAGG TTTTGGTGAG
CAGATCGAGG GGGTTTGGGA GATCCGCTAC TTCGAGCAAC ATCCGGTTCA GCCAATGATG
CTACGTATGA ATGCCAAAGG TGCGAGTTAC GACGTGGGTG AGAGTTATCA GCAGGGAGAA
GTGATGATTC GAGACCGCAT AGAAGTGGTC TATCGATTGA AATAG
 
Protein sequence
MKKSLLAAII SGGLILAAPQ LQASELSFPH LETIGVSELA VEADMAEINV AVVIRDKTAK 
GAKNASDKAV AKFIARLKKA GIERSLIQSA NLNLQPQYHY EKDKPAQLTG YMASRRLTVT
VQDLTRLNAI LDSALEEGIN RVNNIALKSS KEDEYVAKAR LAAIKDAQEK ARLLAEGFGE
QIEGVWEIRY FEQHPVQPMM LRMNAKGASY DVGESYQQGE VMIRDRIEVV YRLK