Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3918 |
Symbol | |
ID | 5611742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4786721 |
End bp | 4787425 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640934872 |
Product | hypothetical protein |
Protein accession | YP_001475650 |
Protein GI | 157377050 |
COG category | [S] Function unknown |
COG ID | [COG2968] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAT CACTATTAGC AGCAATCATA TCCGGCGGTC TTATTCTGGC TGCGCCACAG CTTCAAGCCA GTGAGCTCAG CTTCCCACAC CTTGAGACAA TAGGCGTAAG TGAGCTGGCT GTCGAAGCGG ATATGGCCGA GATAAATGTG GCCGTCGTTA TCAGAGATAA AACCGCCAAA GGTGCGAAAA ACGCCTCAGA TAAGGCCGTT GCAAAATTTA TCGCCAGGCT GAAAAAAGCA GGCATAGAGC GCTCGCTTAT CCAGAGTGCA AACCTGAATC TACAGCCGCA ATACCACTAT GAGAAAGATA AGCCTGCCCA ATTGACCGGT TACATGGCCA GTCGCCGCCT CACCGTCACA GTGCAAGACC TGACCCGTCT CAATGCCATC TTAGACTCGG CATTAGAAGA GGGGATCAAT CGGGTCAATA ACATCGCACT GAAATCCAGT AAGGAAGATG AATATGTGGC TAAGGCCAGA CTCGCAGCCA TCAAAGATGC TCAGGAAAAA GCTCGGCTAC TCGCCGAAGG TTTTGGTGAG CAGATCGAGG GGGTTTGGGA GATCCGCTAC TTCGAGCAAC ATCCGGTTCA GCCAATGATG CTACGTATGA ATGCCAAAGG TGCGAGTTAC GACGTGGGTG AGAGTTATCA GCAGGGAGAA GTGATGATTC GAGACCGCAT AGAAGTGGTC TATCGATTGA AATAG
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Protein sequence | MKKSLLAAII SGGLILAAPQ LQASELSFPH LETIGVSELA VEADMAEINV AVVIRDKTAK GAKNASDKAV AKFIARLKKA GIERSLIQSA NLNLQPQYHY EKDKPAQLTG YMASRRLTVT VQDLTRLNAI LDSALEEGIN RVNNIALKSS KEDEYVAKAR LAAIKDAQEK ARLLAEGFGE QIEGVWEIRY FEQHPVQPMM LRMNAKGASY DVGESYQQGE VMIRDRIEVV YRLK
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