Gene Ssed_3913 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3913 
Symbol 
ID5610212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4781546 
End bp4781836 
Gene Length291 bp 
Protein Length96 aa 
Translation table11 
GC content55% 
IMG OID640934867 
Producthypothetical protein 
Protein accessionYP_001475645 
Protein GI157377045 
COG category[R] General function prediction only 
COG ID[COG1342] Predicted DNA-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAAGAC CCAGAAAGTG TCGTCGTCTA TCGGCCTGTG TGCCCTGTAG CATGTTTAAA 
CCTAATGGGA TCCCTTCGGT CGAGCTAACC AAGATCCAGC TGGAAGCCGA TGAGTTTGAA
GCGCTGAATT TAGGCGACGT AGAGAAGATG AGTCAGCTCG ATGCCGCCGC CAGGATGGGG
ATCTCCAGAC AGACATTTGG CAACCTGCTG GCCAGCGCAC GCAAGAAAGT CGCCACCGCT
ATCACCCGCG GACATGCACT AGTGCTGCCT CAAGAGAGAC AAGAGAGCTA A
 
Protein sequence
MPRPRKCRRL SACVPCSMFK PNGIPSVELT KIQLEADEFE ALNLGDVEKM SQLDAAARMG 
ISRQTFGNLL ASARKKVATA ITRGHALVLP QERQES