Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3908 |
Symbol | |
ID | 5611203 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4776241 |
End bp | 4777017 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934862 |
Product | ABC-2 type transporter |
Protein accession | YP_001475640 |
Protein GI | 157377040 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATGA GAGCACTCTA CGCCACGGCA TTTAAGAGTA TTTTAACCAA AGAGATCAAT CGTTTCACCC GGATCTGGAT ACAGACTCTG GTACCTCCGG CTATCAGCAT GACGCTCTAC TTCCTGATCT TCGGGAACCT GGTAGGTAAG CGGATCGGTG AGATGGGTGG CGTCACCTAT ATGGAGTTTA TCGCGCCGGG CTTGATTATG ATGGCAGTGA TCACGGCCTC TTACTCTAAT GTGGCTTCAT CATTTTTCAG CGCCAAGTTT CAGCGTAACC TCGAAGAGTT GATTGTGGCC CCGGTGCCTC ATTATGTGAT TATTGCCGGT TATGTGGGTG GAGGTGTTGC GCGGGGGCTG TGCGTGGGTA GCATCGTGAC CGGAGTGGCA ATGTTCTTCG TCGATATCTC TTTGCATCAC GCGGGCTTAG TAGCGATAAC TGTGCTGCTT ACCTCTATTC TGTTTGCGCT GGGTGGCTTA ATCAATGCTA TATTTGCAAA GAGTTATGAT GATATCAGTA TTGTGCCAAC CTTTGTGTTA ACGCCGCTCA CCTATCTAGG TGGCGTGTTC TACTCCCTGT CCCTGTTGCC TGATTTCTGG CAAGGTGTGT CGGCACTGAA CCCTGTGGTC TACATGATTA ATGTGTTCCG TTACGGTTTC TTAGGCTACG CCGATATCAG TGTGCCGTTT TCGATTGCCG TTATGGTGGG CTTCTGTATC GGCTTGTGGA GTCTGGCGTA TTATCTGATC AGCCGTGGCA TAGGTTTACG TAGCTAG
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Protein sequence | MNMRALYATA FKSILTKEIN RFTRIWIQTL VPPAISMTLY FLIFGNLVGK RIGEMGGVTY MEFIAPGLIM MAVITASYSN VASSFFSAKF QRNLEELIVA PVPHYVIIAG YVGGGVARGL CVGSIVTGVA MFFVDISLHH AGLVAITVLL TSILFALGGL INAIFAKSYD DISIVPTFVL TPLTYLGGVF YSLSLLPDFW QGVSALNPVV YMINVFRYGF LGYADISVPF SIAVMVGFCI GLWSLAYYLI SRGIGLRS
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