| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3903 |
|---|
| Symbol | panB |
|---|
| ID | 5611345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4772630 |
|---|
| End bp | 4773424 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640934857 |
|---|
| Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| Protein accession | YP_001475635 |
|---|
| Protein GI | 157377035 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
|---|
| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAAA TAACTAGCTC TACCCTGCTC AAATTTAAGC AGGAAGGTAA AAAGTTCACT
GCACTCACAG CCTATGACGC AAGCTTTGCC AGCGCCTTCG ATAGCGAAGG GATTGATGTA
CTGCTCGTTG GCGACTCGAT GGGGATGGTG CTTCAAGGAC ATGATGATAC GCTACCGGTA
ACGGTCGAAG ATATTGCCTA CCATACACGC TGTGTACGTC GCGGTATCAA ACGCTCACTG
CTTATCGCCG ATATGCCATT TATGAGCTAC GCCACAAGCG AACAGGCAAT GACAAATGCC
ACCGCCTTGA TGCAAGCCGG TGCCAACATG GTCAAGCTTG AGGGCGGTCA CTGGTTACTC
GACACCATCA GTAAACTTAC CGAACGCGGC ATCCCGGTCT GTGCACACTT AGGACTGACA
CCACAATCGG TTCACGTCTT CGGTGGTTTT AAGGTTCAGG GACGTGACTC TGATAATGCC
CAACGTATTC TCGATGAGGC CAAGGCCATT GAAGCCGCCG GTGCTCAACT GCTCGTTGTC
GAATGTATCC CAGCCCCTCT GGCTAAGACA ATCAGCGAAG CATTGACGAT ACCGGTAATA
GGTATCGGAG CCGGCGCCGA CACCGATGGT CAGATATTGG TGATGCACGA CGTGCTTGGG
ATCTCCAGCG GCTACATTCC TCGCTTCTCT AAGAATTACC TGAAGCAGAC CGGTGAGATC
CGCGAGGCTA TCCGGGCTTA TATCGATGAA GTCGCACAAG GTATCTTCCC TGGCAGCGAC
CACACTTTTA ACTAA
|
|---|
| Protein sequence | MSKITSSTLL KFKQEGKKFT ALTAYDASFA SAFDSEGIDV LLVGDSMGMV LQGHDDTLPV
TVEDIAYHTR CVRRGIKRSL LIADMPFMSY ATSEQAMTNA TALMQAGANM VKLEGGHWLL
DTISKLTERG IPVCAHLGLT PQSVHVFGGF KVQGRDSDNA QRILDEAKAI EAAGAQLLVV
ECIPAPLAKT ISEALTIPVI GIGAGADTDG QILVMHDVLG ISSGYIPRFS KNYLKQTGEI
REAIRAYIDE VAQGIFPGSD HTFN
|
|---|
| |