| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3899 |
|---|
| Symbol | |
|---|
| ID | 5611284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4768847 |
|---|
| End bp | 4769290 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640934853 |
|---|
| Product | TraR/DksA family transcriptional regulator |
|---|
| Protein accession | YP_001475631 |
|---|
| Protein GI | 157377031 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1734] DnaK suppressor protein |
|---|
| TIGRFAM ID | [TIGR02420] RNA polymerase-binding protein DksA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000283088 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGAAG GCACTAAAAA ACTCGGCGTG CTCGCTATCG CAGGTGTAGA ACCTTACCAG
GAAAAGCCTG GTGAGGAGTA TATGAACGCA GATCAGCTGG ACCACTTCAG AACGATTCTG
GACTCTTGGC GTAATCAATT GCGTGAAGAG GTCGATCGTA CTCTTAACCA TATGCAAGAT
GAAGCGGCTA ACTTCCCGGA TCCTGTAGAC CGTGCAGCAC AGGAAGAGGA GTTCAGTCTT
GAGCTTCGTG CTCGTGACAG AGAGCGCAAG CTGATTAAGA AGATCGAAAA GACACTTCAG
AAGATTGAAG AAGATGATTT CGGATTCTGT GAATCTTGTG GCATCGAAAT CGGCATCCGC
CGCCTCGAAG CTCGTCCAAC AGCCGATCAG TGTATCGACT GTAAGACACT TGCAGAGATC
AAAGAAAAGC AGATGGCTGG CTAA
|
|---|
| Protein sequence | MPEGTKKLGV LAIAGVEPYQ EKPGEEYMNA DQLDHFRTIL DSWRNQLREE VDRTLNHMQD
EAANFPDPVD RAAQEEEFSL ELRARDRERK LIKKIEKTLQ KIEEDDFGFC ESCGIEIGIR
RLEARPTADQ CIDCKTLAEI KEKQMAG
|
|---|
| |