| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3898 |
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| Symbol | |
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| ID | 5611283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4767917 |
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| End bp | 4768687 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934852 |
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| Product | sugar fermentation stimulation protein A |
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| Protein accession | YP_001475630 |
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| Protein GI | 157377030 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1489] DNA-binding protein, stimulates sugar fermentation |
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| TIGRFAM ID | [TIGR00230] sugar fermentation stimulation protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000015778 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTTCA CTCCCCCTTT CGAACAGGGC GTCTTACTGA GACGCTATAA GCGCTTCCTC
ACCGACATTA GACTTAGCGA TGGAAGTGAG GTCACCATAC ATTGCCCCAA CACAGGTTCC
ATGAAAAACT GCCTCTTCCC GGGAGAGAAG GTGTGGTTCT CCACATCTGA TAACCCTAAA
CGTAAGTACT CGCGAACCTG GGAGCAGGCA GAGTCAGATG TGGGACATAT AATAGGTATC
AATACCGGCA GAGCAAATCA GCTGGCAGAG GACGCAATCA AAGCCGGCGT AATAACCGAA
CTGAGCGGTT ATCACTCCCT CAAACGTGAA GTTAAATACG GCAGTGAAAA TAGCCGCATC
GATATTCTTC TCAGTGACGA TACAGGTTCG ACTGACACCT CTTTCTCCGG CACACCTCCC
ACCAATACAG AGCCTGCCAA CACAAAAGCT AAGCCAAACT GCTATGTCGA AGTGAAGAGC
TGTACCTTAC TCGAAGAGGG GCAAGGTTAT TTCCCCGATG CCGTCACCAC CCGAGGTCAG
AAGCATTTAA GAGAGCTGAT GGAGATGGTG GAATCAGGCC ACCGAGGAGT ACTGCTTTTT
GTGGTACAAC ACACAGGCAT TGACTCAGTT CAAGCGGCGG CCCATATCGA CCCTGACTAC
GCATCCCTGC TGACCAAGGC CCATAGTGCC GGGGTCGAAG TCATCGCCTA TAGCGCTGAA
ATGTCCCCAA AAGGGGCTTC CTTGCTTAAA TCCTGCCCTG TCAAACTCTA A
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| Protein sequence | MQFTPPFEQG VLLRRYKRFL TDIRLSDGSE VTIHCPNTGS MKNCLFPGEK VWFSTSDNPK
RKYSRTWEQA ESDVGHIIGI NTGRANQLAE DAIKAGVITE LSGYHSLKRE VKYGSENSRI
DILLSDDTGS TDTSFSGTPP TNTEPANTKA KPNCYVEVKS CTLLEEGQGY FPDAVTTRGQ
KHLRELMEMV ESGHRGVLLF VVQHTGIDSV QAAAHIDPDY ASLLTKAHSA GVEVIAYSAE
MSPKGASLLK SCPVKL
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