| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3895 |
|---|
| Symbol | |
|---|
| ID | 5611703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4762715 |
|---|
| End bp | 4765282 |
|---|
| Gene Length | 2568 bp |
|---|
| Protein Length | 855 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640934849 |
|---|
| Product | ATP-dependent helicase HrpB |
|---|
| Protein accession | YP_001475627 |
|---|
| Protein GI | 157377027 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTGTAATT CAGATGTCAT CTCCTTGGAA CAGTTACCCG TACATAGCCT GCTCAACCCT
CTGCGTAGGG CTTTTGGTCA GCATAATCAA GTCATTCTCG AAGCTCCTAC CGGCGCAGGT
AAATCTACTG CACTGCCTTT GGCCATGCTC GATTGGTCAG AGATAAAAGG TAAGATATTG
ATGCTGGAGC CCAGACGTGT GGCGGCGAGA AGTGTGGCTC ACTATATTGC GAGCCAGCGA
GGCTGTGCTA TCGGTGAAGA GATAGGCTTC AGGGTCCGAG GGGAGTCACG CAGCAGGGCG
ACGACTAAGC TGGAGATCGT CACCGAAGGT ATTTTGACCC GAATGATCCA GCAAGATCCC
GAGTTAGAGG GGATAGGGTT GATCATCTTC GATGAGATCC ATGAACGCCA CCTGACCACA
GATCTCGGGC TGGCTTTGGC CCTTGAAATC CAGGGAACGT TTCGGGAAGA TCTTAAGATC
TTAGCCATGT CGGCGACGCT TTCGGGTCTG CCACTGCACA GAGTCATGCC CGAGGCCATC
TCCCTGAAGA GCGAGGGGCG CAGCTTTCCT GTCGATATCG CCTATAACGC CGCTTCCGCT
TCGAAAAACA GATCCCAACA TCAGTCCCAC TCCCATTGGA TAGAGCACAT GGGGCGAAGC
ATACTGGACT TGCTCAAGAA CGATAATGCC TTGGTTGATG ACACATCTAA AGGCTCACTG
CTTGCATTTC TGCCCGGCCA GGGGGAGATC ATGCGCTTGC ACGACTTCTT AGCGAGCCGA
TTGGATTTGA ATCAATTCTC ACTCTGTCCG CTCTACGGTA GTTTACCCGC AAAGGCGCAA
GATAGAGCCA TAGCCGCAGC AGACGATGGT AAACGTAAAA TAGTGCTCTC AACCAATGTG
GCCGAGTCGA GTCTGACCAT CGAAGGGATC ACTATGGTGG TCGACAGTGG ATATAAGCGG
CAGGCCAGCT TTAACCCCAG AACGGGTGTG ACCAAACTGT CACTCAAACG TATCAGCCAA
GCTTCAGCTG CCCAGCGTAG CGGTCGTGCG GGGCGTTTGG TTCCGGGGCA CTCTCTGCGC
CTCTGGAGTC AGGAGGAGCA GGGCAGGCTA TTAAAGGCCG ATGAGCCCGA GATCCTGCAT
ACCGATCTTA TTCCTATGGT GCACGACGGA GCGTGTTGGG GAGTGAAGTC ACTCTCAGAG
CTTCCCCTGT TAACTCAGCC CTCAAAGGCA AATGAATCGG TAGCCTGGCA GTTACTACAG
ATGCTCGACG TGGTCGATGA ACGCAGAAAA ATTACGACTC ATGGAAGGCA AGCCTACGAG
TTAGGCTGTC ATCCCAGGTT GGCGCATATG TTACTCAAGG CCAAGTCTCT ATCGACAAAG
ACCGGATCAA ATGAACTCGC GGGCTTAGCC TGCTTATTGG CCGGTGTCTT AGAGTCTCGC
TCCCGCTCCC GTCACGGCAC CGATATTGGC AATTATTTAA GAGAGGCCGG TCAAGGGGAA
TCTGGTCAGC AGGTACGCTT ATGGATGAAA AAACTTAAGG TTACTATGCC TTTGTCTGAG
ATTGTTGCCG GCGCCGCCAG CTCTGATATC GCTTTCCTGC TCGCGTTAGC GTTTCCCGAT
CGTATCGCGA AAAGCCGGGG AGTGTCGGGT TATCAACTGG CCAACGGTAC CGGGGTGATC
CTGCCCGATA ACGATCCTCT CTCTCATGTG GATTGGCTGG TGGTTGCAGA TTTTCAGGAG
AGTGAAGGCA GAACGTCCGG CCGGGTTTAC CTTGCCGCCG AGATTGACAG TGCGGCGTTT
AAGGAGCAGC TCTCATTTTT AGTGTCGACC AAAGACTATT GTGGCTGGGA TGAGTCGAAA
GGACGCTTCT TCGCCGAGAC TCAGAGATGT ATCGGTCAGA TAGTGCTGAG CAAGACAGCA
TCTAAGAAGC CTGATCCGGA ACAGATAAAA GCCGCCATCA TCGAACAGCT CCTCGCTAAG
GGGCTGGGTC TGCTCAATAT GGATGATAAG TGGTTGCAGC TACAAAACAG GGTGAAGCTA
GCGGCAGCAC TCGACGGCGA GCATGGCTGG CCCGACTTTG GTAATGCCAG CCTGCTGGCA
AGTCTCAATG ATTGGTTGAG TCCCTATTTA AATGATGTCA GAAGCTTGTC ACAACTGAAG
GCTCTCGACT GTTATACTCT GCTGCTCAAT CTCCTCGGAT GGGATAGACA GCGCAGGCTG
GATACGCTGT TTCCTTGCCA CTGGCCGATG GCGACGGGTA CGAAGGCGAA GATAACTTAT
GATGACGCAG GCAGAGCCCT GCTCAGTGTC AGGCTGCAAG AGGCGCTGGG AATGGCACAA
AGCCCGGTTT TGGCCAATGG CAGACTCATA GTGACGATGG AGTTGCTATC TCCGGCCCGA
AGACCCTTGG CGTTAACGGC CGATCTTGCC AGTTTTTGGC AAGGACCCTA TGTCGAGGTA
AAAAAAGAGA TGAAAGGAAG GTATCCCAAA CACCTTTGGC CCGACGATCC TGCCAATACC
TTACCGACTC GTTTTACCAA GAAAAAGACG TTAAGCGCAA AGAGTTAG
|
|---|
| Protein sequence | MCNSDVISLE QLPVHSLLNP LRRAFGQHNQ VILEAPTGAG KSTALPLAML DWSEIKGKIL
MLEPRRVAAR SVAHYIASQR GCAIGEEIGF RVRGESRSRA TTKLEIVTEG ILTRMIQQDP
ELEGIGLIIF DEIHERHLTT DLGLALALEI QGTFREDLKI LAMSATLSGL PLHRVMPEAI
SLKSEGRSFP VDIAYNAASA SKNRSQHQSH SHWIEHMGRS ILDLLKNDNA LVDDTSKGSL
LAFLPGQGEI MRLHDFLASR LDLNQFSLCP LYGSLPAKAQ DRAIAAADDG KRKIVLSTNV
AESSLTIEGI TMVVDSGYKR QASFNPRTGV TKLSLKRISQ ASAAQRSGRA GRLVPGHSLR
LWSQEEQGRL LKADEPEILH TDLIPMVHDG ACWGVKSLSE LPLLTQPSKA NESVAWQLLQ
MLDVVDERRK ITTHGRQAYE LGCHPRLAHM LLKAKSLSTK TGSNELAGLA CLLAGVLESR
SRSRHGTDIG NYLREAGQGE SGQQVRLWMK KLKVTMPLSE IVAGAASSDI AFLLALAFPD
RIAKSRGVSG YQLANGTGVI LPDNDPLSHV DWLVVADFQE SEGRTSGRVY LAAEIDSAAF
KEQLSFLVST KDYCGWDESK GRFFAETQRC IGQIVLSKTA SKKPDPEQIK AAIIEQLLAK
GLGLLNMDDK WLQLQNRVKL AAALDGEHGW PDFGNASLLA SLNDWLSPYL NDVRSLSQLK
ALDCYTLLLN LLGWDRQRRL DTLFPCHWPM ATGTKAKITY DDAGRALLSV RLQEALGMAQ
SPVLANGRLI VTMELLSPAR RPLALTADLA SFWQGPYVEV KKEMKGRYPK HLWPDDPANT
LPTRFTKKKT LSAKS
|
|---|
| |