| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3892 |
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| Symbol | |
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| ID | 5614177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4755639 |
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| End bp | 4757573 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640934846 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475624 |
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| Protein GI | 157377024 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.810421 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0279299 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGATAT ATTGCAGGTT TGCATTAGTC GTTATCAGTT TTATTTTATT GGGTTGCTCA
GGTTCAGACG ATAGCTCTGA AGAGGTCAAT CTTCCGCCAG TCATTGAGCT GCAAGCGCCA
TCTTCCGCGC TCTCTCTCGA GCAGCTAACC ATCACAGCTC AAGTCACCGA CCCTGAAAAT
GACAGTGTAT CTCTTAGCTG GCAATTAACC TCAAACGCAG GCTTTAGCAT GAGCCTCGAA
AATACCACAG AACTCAATTA TCTCGTCCCT TTTACCAAAA TTGATACCGC ATATACTGTC
ACTTTGTTGG CGGAAGATAG CCAAGGTAAT CAAACGACTC TATCCTCTGA ATTCACTGTA
GCCGCATTAG CGGTCGATTT CTCACTGCCC TTTGGGGCTG TGACACAGCG CCATATTGAT
GTTGAAGCTA ATATACGCAA TATTGCGACT GAAAATCTAA GCTATCAATG GCGAGTTTCA
CAGGGCTCTG AATACCCTTT AATTGAGCCT GAGTCTCGGC GAGTTCGCTT TTATGCGGCT
AAAGGACTGA CCGAAGATTA CAATCCAGAT AGTTCACCTG AATATCGCCG TGGGCTAGGT
ATTACTGAAG AGATGCAGTT GACGTTCTCA ATATCACATG AGGGTGAGAC TCTAAACTTC
GACAAAGCAT TTACCATCCA ACCTATTCAA AAAGTGCCAG AGTGGCCCCT GCATACAGTG
CCGGCTAAAG ATTCAGTTGC AAAGGGGTTA GCTAATAATG TTATCCAGGC TAATGCCGAA
CAAAGCGATA ACTGTTTAAA CAAGGATAAT GCCGTCAAGC ACAATTTCGA TTTTAACCAA
GATGGTGTCG ATGACATATT TTGTTCTTCT TATACTTATT ATAGTAACCT TTATTTCTAT
CTATCCAATG TAAGTTCAAC AGATGAGATA ACCTATACCG AGTCAATATT AATCGGCAAG
CGCAGGAGGC TGGTTGGAAA TGCTGAGTTA ATCGATCTAA ACCAAGATGG TATACCTGTA
TTAGTGCTTG TCGTCGGTAC GAATTTGATA TCATTTTCGT TTGATGCCTC AACTTTGAGT
ATGGTGGAGA AAGAACTTAT CGACTTAGAT TATTATCCCG AAAGTTATCA GTTAGCTGAA
AAAGATGGCA CTTTATCCAT GGCTATTGAG ATTTATGATC ATCTAGATCT TGGTAAATAC
CTAATTTACC AAATTAAGGC ACTAATTTTC GATATAAAGG AACCTGAGCT GCGTAAAACA
AACGAGATTT CAATTGCCTA CTGTATGGAG TGTTGGGTTC AGAGTGCCAT AATAAATGAT
CTCGGTGGTC AAACCGGAGA TGAATTAATT ATCGTGCATA GTGAGCTAAG AGTTAATGGT
CCTACTGGTC ATAATAGTAA GTTAAATGTC GTCAGCCCTG ATTATACTAA AGTTATTGAA
TTTGGAGCTT TTCATACGGT TTACCAGGAA GATATTGATA ACGATTCAAC TTTAGAATTG
GTTGGTTTCA CAGAAGCTTA TTGGGGAGGA GGGCAATCTT CCTACGGGCT AAAATTGTTA
TTATCTTTGG ACCAAAACGA GGAACCTCTG AATATAGTAT TGAAAAGCTA TTACAATGAT
ATTTTGTTTG ATTATGCTGC TGTTCCAAAT GAAATTGATA TCAATCAAGA TGGAAAGTTA
GATAAGTATT TTAAAAACAA GCATATTGAC AATTATTATA AAAAAATGGA TCTAATTCAT
GTTTATCGGT TAGCCGATTC AGATAGAGAG GTGCTGATAG CCAGGACTCC TTATGGTGTC
CCCATTGATG ATTTTATTGG CTTGGCAGAC ATGAATAATG ATGGCTATTT GGATATAAAG
TTTGGCCATA TAAATGATAA CCAAGAAGTG GTGACCTCTT GGCTCGAGAA TGAAGCTGGC
TATCCATTCG AGTAA
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| Protein sequence | MLIYCRFALV VISFILLGCS GSDDSSEEVN LPPVIELQAP SSALSLEQLT ITAQVTDPEN
DSVSLSWQLT SNAGFSMSLE NTTELNYLVP FTKIDTAYTV TLLAEDSQGN QTTLSSEFTV
AALAVDFSLP FGAVTQRHID VEANIRNIAT ENLSYQWRVS QGSEYPLIEP ESRRVRFYAA
KGLTEDYNPD SSPEYRRGLG ITEEMQLTFS ISHEGETLNF DKAFTIQPIQ KVPEWPLHTV
PAKDSVAKGL ANNVIQANAE QSDNCLNKDN AVKHNFDFNQ DGVDDIFCSS YTYYSNLYFY
LSNVSSTDEI TYTESILIGK RRRLVGNAEL IDLNQDGIPV LVLVVGTNLI SFSFDASTLS
MVEKELIDLD YYPESYQLAE KDGTLSMAIE IYDHLDLGKY LIYQIKALIF DIKEPELRKT
NEISIAYCME CWVQSAIIND LGGQTGDELI IVHSELRVNG PTGHNSKLNV VSPDYTKVIE
FGAFHTVYQE DIDNDSTLEL VGFTEAYWGG GQSSYGLKLL LSLDQNEEPL NIVLKSYYND
ILFDYAAVPN EIDINQDGKL DKYFKNKHID NYYKKMDLIH VYRLADSDRE VLIARTPYGV
PIDDFIGLAD MNNDGYLDIK FGHINDNQEV VTSWLENEAG YPFE
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