| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3887 |
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| Symbol | |
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| ID | 5611183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4749263 |
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| End bp | 4749964 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934841 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475619 |
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| Protein GI | 157377019 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0229924 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0459131 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTTCTAA CTCCATATTA TAAAAAAGAA AATCAATCGG TCTCAATTCT CCCGTCTCAG
GCGAGTGACT TTGCAAAAAT CGTGGCTCAG GATTTTAATC CTATTCATGA TGAAGGTGCC
AAGCGTTTCT GTGTACCAGG AGACCTGCTA TTTTCTTTGG TGTTAGGGGA ATATGGTTTA
AGTCAGAAGA TGAGCTTCAC CTTCGCCGGT ATGGTGGGAG ATGGAGTTAA GTTAGAGTTC
CCCGAGTCTG TCGGTGAGAA TTTTGACGTT CATGATGATA AAGATAAACA CTATCTGAGT
GTTGAGCGAC ATGGCGATGT GAGAAGTTGT GAAGCTCAGG TTGAGTCCTT TATCCGTAGT
TATGTGGCTT TTTCCGGACT GAACTTCATT CATGTGCTTG TGCCCATGAT GGAGCAACAC
CAGGTGATGA TAAACCCGGC GCGTCCTTTG GTTATCTACG AGAGCATGTC ATTCGATCTC
AATACGCTCG ATTTTACCCA AGTGACGCTT TCACTGGTTG AGCAGGAACT TATCGTCGAC
GGTAAGCGCG GTAATGTCAC CTTGAAGTTT GAGTTACATA GTGGCGATAC CTTAGTGGGC
ACGGGAGTGA AAACCTTGGT CATGAGTGGC CTGCGTCCCT ATGAGGCAGA TAAAGTGCAA
GGTATGTGTG AAACCTATGA AGGCCGCAGA ACCAGCTTTT AA
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| Protein sequence | MFLTPYYKKE NQSVSILPSQ ASDFAKIVAQ DFNPIHDEGA KRFCVPGDLL FSLVLGEYGL
SQKMSFTFAG MVGDGVKLEF PESVGENFDV HDDKDKHYLS VERHGDVRSC EAQVESFIRS
YVAFSGLNFI HVLVPMMEQH QVMINPARPL VIYESMSFDL NTLDFTQVTL SLVEQELIVD
GKRGNVTLKF ELHSGDTLVG TGVKTLVMSG LRPYEADKVQ GMCETYEGRR TSF
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