| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3879 |
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| Symbol | |
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| ID | 5611040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4734377 |
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| End bp | 4735759 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934833 |
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| Product | two component, sigma54 specific, transcriptional regulator, fis family protein |
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| Protein accession | YP_001475611 |
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| Protein GI | 157377011 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCG CGCGAAATAT TTTGTTAGTC GATGATGAAG CCTCATGGTT GAGAACCTTA
GCCGTGACCC TCAATCGACT GGTTCCGGAA GCGCAAGTCG ATACCTGTGT AGACAGCAGG
CAGGTCGTTA ATCGTCTTTC TGTAGGCGAC TACGCCTTAG TCCTGCTCGA TCTGACAATG
CCATTTCACT CGGGCGAAGA ACTACTCGAG ATGATCCGCT GTGATTTCCC AAAGACCCGC
GTCATCATAG TAACCGGCGT CAATGAGGTC GATACTGCGG TGCGCTGCAT CAAAAATGGG
GCCTATGACT ACTTTATCAA GACTGACAAT GTGGACGATT TGGCCCGGAC CGTCCGTAGA
GCCCTTGAAG TCGTGGGCTT GGAGAGAAAC TATCTGCGGA TAAAAGAGAG TTTCCTGAGC
CGCACCCTGA GTCAGCCGGA GGCCTTCAAT AATATTTTGA CCTGTGAACC CGCCCTGCTG
GATCAGTTCA GATACCTGGA AGCCGTCGCC CTGAGCCCCG AGCCGATCCT CATCTTCGGT
GAGAGCGGCA CGGGAAAAGA TGAATTTGCC AAGTCTTGCC ATCAGCTCTG TTGCCCCGAT
GCCCCGTTCA TCAATGTGAA CCTTGCTGGG GTCGGTACCG ATGCGTTTGA ACTACAGCTA
TTCGGACAGC TCCATACCCA CGAAGACGGT CAGGTTTCGG CTCAGGCAGG CGTGTTACAT
CAGGTTAAAA ACGGACTGCT CTATCTCAAT GAGATTGGGG ATCTGCCCTT AGAAGCCCAG
GCAAAGCTGG TCGATGTGAT CGAGCACAAA CAGTACTACC CTATTGGCAG CGATCGCCCC
TACCCGGTTA ACTGTAAGAT CATCACCTCG ACTCAAAACG ATCTGCTGGC ACTGAATCAG
GCCGGCAAGT TTCGCAGCGA TCTGCTATAT AGGTTGCGAT CACACAAGAT CAAATTACCC
CCACTGAGAA ACCGTACCCT GGACCTCTCT ATGCTCATCA ACCACTTTAT CGCCCAAGCG
GCCGAAGAGA TGGGACTCGA TGCCCCGCAG CAACCCGGAA ATTTAGCGAG CCAACTGGCA
GACTACGCCT TCCCGGGGAA TCTTCATGAA CTGAAGGGTA TGGTCTTCGA TGCGGTGAGT
CGCAGCGATG GTGTTCAGCT CAATATCTCC CCCTTTATGG AAGCAATTAA AGAGCAAAAA
GGTTCAGGTG AGGCTCCACA AAATATTCTG GTATTTCCAA AGAGTTTGCC AACCTTAGCC
GAGATGAGTA ATGCACTGAT CAATGAGGCC ATGAGCCGTA CGGCAAATAA TCAAACAGCT
GCTGCGCAGA TGCTGGGAAT AAGTCAAAGT GCCTTGAGTC GACGCATGAC TAAGGAAAAA
TAG
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| Protein sequence | MKLARNILLV DDEASWLRTL AVTLNRLVPE AQVDTCVDSR QVVNRLSVGD YALVLLDLTM
PFHSGEELLE MIRCDFPKTR VIIVTGVNEV DTAVRCIKNG AYDYFIKTDN VDDLARTVRR
ALEVVGLERN YLRIKESFLS RTLSQPEAFN NILTCEPALL DQFRYLEAVA LSPEPILIFG
ESGTGKDEFA KSCHQLCCPD APFINVNLAG VGTDAFELQL FGQLHTHEDG QVSAQAGVLH
QVKNGLLYLN EIGDLPLEAQ AKLVDVIEHK QYYPIGSDRP YPVNCKIITS TQNDLLALNQ
AGKFRSDLLY RLRSHKIKLP PLRNRTLDLS MLINHFIAQA AEEMGLDAPQ QPGNLASQLA
DYAFPGNLHE LKGMVFDAVS RSDGVQLNIS PFMEAIKEQK GSGEAPQNIL VFPKSLPTLA
EMSNALINEA MSRTANNQTA AAQMLGISQS ALSRRMTKEK
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