| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3878 |
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| Symbol | |
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| ID | 5611039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4732302 |
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| End bp | 4734380 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934832 |
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| Product | histidine kinase |
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| Protein accession | YP_001475610 |
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| Protein GI | 157377010 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.245936 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCAAC AAATTTGCGC CCATCACCAC AGTTCATTAG CTATCGAACA TGTTAAAATC
GCCGTTATGA AATATCTTCT TATATTAGTC ATGGTGCTCT GTTTCCATGC ACCATATCTG
GCCGCACAGG CACAAGACTT GTCACACAAG AGTATTGTGT TTGGTGTTCA CTCAAAAACG
GCCCCACTGG AGTGGCGTAA CAATGGTGTT GACCAAGGAT TTAACCTCGA GCTGATAGGC
AGAATTGGAC AACTCATAGA TAAAAGAATC GTTGTCAGAC GTAAAACATT TCAGCAACTG
CTGACCGATG TTCATGATCC CGACTGCCCT ATCGACGTCA TCGCCGTTGT CAGTCCGGTC
AGCATAGACA GAAAACTCAG TCAGTCTGAT CCCATCTATG CCACCCACGC CAAAGCATAC
ACATTGCAGG GAAAATCCTT TATCAACAGC TGGCACGACC TTGTCGGTAA GCGGGTTGCC
ATCAAGAAAG GCGCCTTCGT GGACGTCTAT ATATCGGGTC AGCCACAGGA ATTTGAGCGA
GTCGATGTCG ATCTCTATGA GACCGGCTTT CAGCTGTTAA TCAAGGGAGA GGTCGATGTG
GTTCTCGCCG AGAACTTTGT CGCCAGACGC CTGATGCCAC TCTATCCAAA GATTAGAAGT
TCCAGCGATG CACTTATATA TGGTGCGTTC AACTTTGTGA GTCATAAGGT TAATGCTCCT
CTGATGGGCC AAATTAACGA TGCCCTCAGG CAGTTAAAAC TCTCCGGGGA ATACGACCGA
CTCGTCAACA AGTGGTTTGG TACCGGTCGA GAGAAGGTCG ATCTCACCTC CACCCAACAG
AAGATGTTGT GGCTGGCCAT CACGGTGAGT ATCATCTCTG CACTTGGCAT GATACTCACC
GGCTATATCA GCAGAAGCCT GCGAAAACGT ACCCGCTCAC TGAATGTCGA GCTAACGCAA
CGTCGCAAGG CCGAACATCA AATATCCAGC CTATCAAAAC AGTTTCAATC TGTGCTGGAT
GGGATCCCCC ATGGCGTCAC GCTATTTAAT CGGGAATGTG ATTGTTTGTG GAGTAATGAT
AATAATAACG AACTGTTAAA AAATCCCGAA TTTCACTTTA CCGATGGCGA ACCTTTCGAG
CTGAAGATCA CTCTGCTTGA GGTATTGAAC AGCCAGAAGT CTCTGATTGA AGATATGACT
TTTCTGGATC AATTCTGGCA GCTCCAAATT CACCCCATAG GGGAGGATCA GGCCGTCATC
CTATTGGAGG AAGCCACGGA GCGTCATCAA CTCAGACAAG CCAATAATGA AGCGAGCCGC
CTGGCCTCAT TAGGCGAACT CTCTGCCGGA ATCGCCCATG AGATCAATAA TCCAACGGGA
ATTATTATCC ATTCCGTGGC GTTCTTAAAT GATGCACTAA AAGATCTACA GCCGGCAACC
GACGCCTACC AGAAGCAAAA CCCTTTTTGG GTAATCGCAG GGCTGGAACC GGAACGCGCC
CTACATGAGC TGCATTATAG CTGCCTCAAT ATTGATGAGG GTGCCACCCG GATCAGCCGA
ATCGTAAACG ACTTAAAGCG GTATGCCTTA CCCAATATTG CCACCGAGCA CCAAGTGTTA
AGCCTGAATG AAGTGGTGCG GGTGTCGCTG CGTTTGACGG CAAATCAGAT TAAAATATTT
AAAATCAGAA CCCAACTGCG CCAACCAGAG CCGATGATCT TGGGTGATGC CCAGCAGCTG
CATCAGGTAC TGATTAACCT TATTCAAAAT GCCTGCCATG CATCGCCACC CGACGATGGA
ACGGACACAG ATGACGGCAT GATCTCAATA GAGACCAGCA TTGTGGATGG CAAAGCCTGC
TTAATCGTCT GCGATAATGG TTCCGGTATG GATCAAGCGA CACTACAACG CATAACAGAG
CCTTTCTTTA CGACTCGTCG CTCCTGCGGC GGCACCGGGC TCGGCTTATC GGTGTGCAGC
AGAATAATCA AAGAACATAA GGGGGAAATG CAGATAACCT CTCGCCAAGG CAAAGGTACA
TGCATCAAAC TTCTCTTTTC ATTGGAGCAA CTAAGATGA
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| Protein sequence | MLQQICAHHH SSLAIEHVKI AVMKYLLILV MVLCFHAPYL AAQAQDLSHK SIVFGVHSKT
APLEWRNNGV DQGFNLELIG RIGQLIDKRI VVRRKTFQQL LTDVHDPDCP IDVIAVVSPV
SIDRKLSQSD PIYATHAKAY TLQGKSFINS WHDLVGKRVA IKKGAFVDVY ISGQPQEFER
VDVDLYETGF QLLIKGEVDV VLAENFVARR LMPLYPKIRS SSDALIYGAF NFVSHKVNAP
LMGQINDALR QLKLSGEYDR LVNKWFGTGR EKVDLTSTQQ KMLWLAITVS IISALGMILT
GYISRSLRKR TRSLNVELTQ RRKAEHQISS LSKQFQSVLD GIPHGVTLFN RECDCLWSND
NNNELLKNPE FHFTDGEPFE LKITLLEVLN SQKSLIEDMT FLDQFWQLQI HPIGEDQAVI
LLEEATERHQ LRQANNEASR LASLGELSAG IAHEINNPTG IIIHSVAFLN DALKDLQPAT
DAYQKQNPFW VIAGLEPERA LHELHYSCLN IDEGATRISR IVNDLKRYAL PNIATEHQVL
SLNEVVRVSL RLTANQIKIF KIRTQLRQPE PMILGDAQQL HQVLINLIQN ACHASPPDDG
TDTDDGMISI ETSIVDGKAC LIVCDNGSGM DQATLQRITE PFFTTRRSCG GTGLGLSVCS
RIIKEHKGEM QITSRQGKGT CIKLLFSLEQ LR
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