| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3877 |
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| Symbol | |
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| ID | 5611518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4730169 |
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| End bp | 4731959 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934831 |
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| Product | succinate dehydrogenase |
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| Protein accession | YP_001475609 |
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| Protein GI | 157377009 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01813] flavocytochrome c |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000270258 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACT TTAAAAAAGC TATATGCCTG GCCACCTTAA TTGGTTCTGC AGGGATGGTA
GCGAACGCAA CTGCTGCTGA TAACCTTGCC GATTTTCATG CTGAAAATCA AGAGTGTGAT
AGCTGTCATA CACCGGATGG TGAACTATCT AACGATAGCC TTACTTATGA AAATGAGCAG
TGTGTTTCTT GTCACGGCTC CATGGAAGAG GTCGCTGAAG AGACGGTACA TGAGCATTAC
AATGCCCATG ATTCTCACTT CCCAGGAGAG ATCGCTTGTA CCTCTTGTCA CAGCGCCCAT
GAAAAATCTA TGGTCTATTG TGATTCTTGC CACAGCTTCG ACTTCGATAT GCCGTATGTA
GGCAAGTGGG AACGTCACGA GCCAAGCATT GCAGAACTTG CTAAAGATAA ATCTGAGCGT
GAAGCGGCAT TAGCCCTCGC ACCAAAAGAT ACTGTCGATG TGGTCGTTGT CGGTTCTGGC
GGAGCAGGTT TCTCTGCGTC TGTTTCAGCC CACGATCATG GCGCAAAAGT GATTCTTATC
GAGAAAGAGC CTGTTATCGG TGGTAATGCA AAACTTGCAG CCGGTGGTAT GAATGCCGCC
TGGACCGATC AGCAAAAAGC TAAAGGCATC GAAGATAGCC TTGAGTTGAT GACTAAAGAC
ACCATGAAAG GTGGCCGTAA CATCAACGAC CCAGCGTTGG TAGACGTTCT GGTTTCTCAC
TCAAAAGGTT CTGTCGATTG GATGACAGCC ATGGGTGCAG ACCTGAGTGA TGTCGGTCGT
ATGGGTGGCG CATCGGTTAA CCGTACTCAC CGTCCAACGG GTGGTGCTGG TGTTGGCGCA
CACGTTGTCC AGGTGCTTTA TGATAACGCC GTTAAGCGTG ATATCGATAT GCGTATGAAT
ACACGTGGTA TCGAAATCCT TAAAGATGAC TCAGGTAACG TTAAAGGCCT GCTAGTTAAG
GGCATGTACA AAGGCTACTA CTGGATTAAG GCCGATGCCG TTATTCTGGC TACCGGTGGT
TTCGCTAAGA ACAATGAGCG TGTTTCTAAG CTTGATCCTA AACTGAAAGG CTTTGTATCG
ACTAACCAAC CTGGTGCAAC AGGTGATGGT ATCGATGTAG CCGGTAACGC CGGCGCGGCA
ATGGTAGACC TTCAGTACAT CCAGGCTCAC CCAACACTTT CTGTGAAAGG TGGTGTGATG
GTAACTGAAG CGGTACGTGG TAACGGTGCA ATTTTGGTTA ACCGTGAAGG TAAGCGTTTC
GTCAACGAGA TCACGACTCG TGATAAAGCC GCTGCTGCGA TTTTACAACA AACAGGCAAA
TCAGCTTACT TGATTTTCGA TGATTCAGTA CGTAAGTCAC TGAAGAAAAT TGATAAGTAT
ATTGGTCTAG GCGTCGCTCC TACTGCCGAT ACGCTTGTTA AGCTAGGTAA GCTGGAGAAT
ATCGATGGTA AGGCTCTGAC TGAAACCGTT GCTCGTTATA ATACTTTCGT TACCAGTGGT
AAAGATGCCG ATTTCGAGCG TCCAAACCTG CCTCGTGCAA TCAATGAAGG TAACTACTAC
GCTATCGAAG TGACTCCAGG TGTTCACCAC ACTATGGGTG GTGTGATGAT TGATTCTAAA
GCAGAAGTTA TGAATGCTAA GAAGCAGATC ATCCCTGGCC TATATGGCGC TGGTGAAGTG
ACCGGTGGTG TTCACGGTGC TAACCGCTTA GGTGGTAATG CTATCTCTGA TATCATCACC
TTCGGTAGAT TAGCCGGTGA ACAAGCGGCG GCTTACTCTA AGAAGAAATA G
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| Protein sequence | MKNFKKAICL ATLIGSAGMV ANATAADNLA DFHAENQECD SCHTPDGELS NDSLTYENEQ
CVSCHGSMEE VAEETVHEHY NAHDSHFPGE IACTSCHSAH EKSMVYCDSC HSFDFDMPYV
GKWERHEPSI AELAKDKSER EAALALAPKD TVDVVVVGSG GAGFSASVSA HDHGAKVILI
EKEPVIGGNA KLAAGGMNAA WTDQQKAKGI EDSLELMTKD TMKGGRNIND PALVDVLVSH
SKGSVDWMTA MGADLSDVGR MGGASVNRTH RPTGGAGVGA HVVQVLYDNA VKRDIDMRMN
TRGIEILKDD SGNVKGLLVK GMYKGYYWIK ADAVILATGG FAKNNERVSK LDPKLKGFVS
TNQPGATGDG IDVAGNAGAA MVDLQYIQAH PTLSVKGGVM VTEAVRGNGA ILVNREGKRF
VNEITTRDKA AAAILQQTGK SAYLIFDDSV RKSLKKIDKY IGLGVAPTAD TLVKLGKLEN
IDGKALTETV ARYNTFVTSG KDADFERPNL PRAINEGNYY AIEVTPGVHH TMGGVMIDSK
AEVMNAKKQI IPGLYGAGEV TGGVHGANRL GGNAISDIIT FGRLAGEQAA AYSKKK
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