| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3876 |
|---|
| Symbol | |
|---|
| ID | 5611517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4728365 |
|---|
| End bp | 4729690 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640934830 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001475608 |
|---|
| Protein GI | 157377008 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000107272 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATCGA TTCGAACTAA GCTCAGTCTC TGGCTTACGG GGTTAGTCAT CTTATCGACG
GTCGTTGGCA TTATCTTTTT CGAGTCTATG TTGAGACAGG CATTCCACGA TTCGATTATC
GCGAGATTAC AGGAAGATAT TGAACAGGTT ATGCTGGCCA CTCACCTTCA GGGAGATGAG
CTAAGCATAG ATCAAAGCCA GCTATCAGGC TTCTATAAGC CGGTATTTTC AGGCCGTTAT
TATCAGCTCA ATCTGCCGGA CCAGGAGATC CGCTCGAGAT CGCTTTGGGA TCAGAAACTC
GAAATTTTGC CACTGAAAAA GGGGGATAGT CGTGTCTGGC AAACCAAAGG GCCCCAAAAT
CATGATATCC AACTCCTCTC TATCGGACTC AGCTCTGACT CTCTCAATGT CGATGCCACT
CTAACCGTTG CACAAGACCT GAGTATTGGG CGTAAAATTT TTACTCAAAT TTACGGCACA
AAACTGGGTG TCAACCTGGC GATGTTATTA ACCATGATAG CCGGCATTTT TCTGGTATTG
AGACAATCTT TTAAGCCAAT TAACCATATG CAATCGGCCC TCTCAAAACT CAGAGAGGGA
GAGATAACTT CGTTAGAGAT CGAAAAGATC CCTCCGGAGT TGCAGGGGTT AGCCTCGACC
TACAATGAGC TGCTGCAGTA CTCAAGTAAG CAACTCGAAA GAAGCCGCAA TAATATCGGT
AATCTAAGCC ATGGGTTAAA GACGCCGCTG GCGGTGATGC AGCAACAGGT AGAAGCTTTG
GGACTCAAAG ATCCCGATGC GGCGATAGCG CTTCAAAAGC AGCTGGACTT AGTCCACAAG
ATGATCGAGA GAAAACTCGC TGCCGCTCGG ATCACCGGAG AGATGTTACC GGCGGCTCAG
ATGCAACTCC CCAAAGATTT AGACGATCTT TGCCAGACAT TGAGCAAGGT ACATTTTCAT
AAGCAGATTC AGTGCAATAT CCATATTCCG GAGAAACTGT TAAGACTGCC CCTTCATAGG
GAAGATGGCA TGGAGCTCAT CGGAAACTTA CTCGATAATG CCCACAAATG GGCTAAATCA
CGGGTGGAGA TAGGTGCAAG CATTGAAGAT GACGCCATCT GTCTCATCAT TGAAGATGAC
GGCCCCGGTG TCGCGAGTGA GGAACTGGCT CAACTGACCA GTCGTGGTAA ACGCTTAGAT
GAGGCGACCA TGGGTCATGG CCTGGGGCTC TCTATCGTAA AAGATATTGC CGAACAATAT
GAGATTGATT TGCAATTTAC CCATAGCGAA CAATTCGGTG GGTTAAAAGT CAGTTTAACC
TTCTAA
|
|---|
| Protein sequence | MISIRTKLSL WLTGLVILST VVGIIFFESM LRQAFHDSII ARLQEDIEQV MLATHLQGDE
LSIDQSQLSG FYKPVFSGRY YQLNLPDQEI RSRSLWDQKL EILPLKKGDS RVWQTKGPQN
HDIQLLSIGL SSDSLNVDAT LTVAQDLSIG RKIFTQIYGT KLGVNLAMLL TMIAGIFLVL
RQSFKPINHM QSALSKLREG EITSLEIEKI PPELQGLAST YNELLQYSSK QLERSRNNIG
NLSHGLKTPL AVMQQQVEAL GLKDPDAAIA LQKQLDLVHK MIERKLAAAR ITGEMLPAAQ
MQLPKDLDDL CQTLSKVHFH KQIQCNIHIP EKLLRLPLHR EDGMELIGNL LDNAHKWAKS
RVEIGASIED DAICLIIEDD GPGVASEELA QLTSRGKRLD EATMGHGLGL SIVKDIAEQY
EIDLQFTHSE QFGGLKVSLT F
|
|---|
| |