Gene Ssed_3873 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3873 
Symbol 
ID5611602 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4726590 
End bp4727225 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content43% 
IMG OID640934827 
ProductcAMP-regulatory protein 
Protein accessionYP_001475605 
Protein GI157377005 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000105148 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCTGA TTGGTAAGCC TAAACCGGAT CCTACTTTGG AATGGTTTTT ATCACACTGT 
CACATTCATA AGTATCCAGC CAAAAGCACT TTGATCCACG CTGGTGAAGA ATCGGATACG
CTTTATTACA TCGTTAAAGG TTCTGTCGCT GTTTTGATCA AAGACGAAGA AGGCAAAGAG
ATGATCCTCT CTTACCTGAA TCAAGGCGAC TTCATCGGTG AACTTGGTCT GTTTGAAGAG
CAAGCCGAAC GAACTGCTTG GGTACGTGCT AAGCAACCTT GTGAAATTGC AGAAATATCT
TACAAGAAAT TTAAGCAGCT TATCCAGGTT AACCCTGAAA TTTTGATGAA GCTTTCTTCT
CAGATGGCAT ATCGTCTGCA TAGCACCAGC CAGAAAGTTG GTGATCTTGC ATTCCTTGAT
GTCGCAGGAA GAATCGCTCA AACATTATTA CATTTGGCAA AACAGCCTGA TGCAATGACT
CACCCGGATG GCATGCAGAT CAAGATCACT CGTCAAGAGA TTGGTCAAAT TGTTGGTTGT
TCACGTGAGA CTGTGGGACG TATTCTTAAG ATGCTTGAAG AGCAAAGCCT GATTCAAGCT
CACGGTAAAA CAATCGTGGT TTACGGCACG CGCTAA
 
Protein sequence
MALIGKPKPD PTLEWFLSHC HIHKYPAKST LIHAGEESDT LYYIVKGSVA VLIKDEEGKE 
MILSYLNQGD FIGELGLFEE QAERTAWVRA KQPCEIAEIS YKKFKQLIQV NPEILMKLSS
QMAYRLHSTS QKVGDLAFLD VAGRIAQTLL HLAKQPDAMT HPDGMQIKIT RQEIGQIVGC
SRETVGRILK MLEEQSLIQA HGKTIVVYGT R