Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3870 |
Symbol | |
ID | 5611599 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4723168 |
End bp | 4724514 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640934824 |
Product | Co/Zn/Cd efflux system component |
Protein accession | YP_001475602 |
Protein GI | 157377002 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGAGAT ATCAAGAGAT CACACTCGTG GCCTGCCAAC GTGCGCTGGT CACCGTGAGT CTGTGCGTGC TTGCATTATA TGCAGGCAAG AGTGTTGCCC AGTCAGACCA AGGCAAGGTT AATCTGCCTT GGGTACTGGA AAAAACCTTG CTCAACAATG TTCAACTACA AAGCTTTCCC TATGAACTCA GGGTCAGTGA AGCCCTGACC ATACAAGCTG GGATCTCGCC TAATCCTGAG TTTTCTGTCG AAGTTGAAAA TGTGCTGGGC ACAGGTGAGA GACAAGGCGT CGATAATGCC GAGATCACTC TGGCATTAAG CCAACTTATC GAGCTGGGTG GTAAACGTCA GCGCCGCGTC GATGTGGCTC AAGCCACAGA GCGTCAAAAG CTAAGTGAAT ATGAGATATT GCGTCTGGAT ATCCTGGCCG AGGCCACAGG GCGTTATTAT CAACTACTGC GCCTGCAAGC CCTGCAAGAC TGGAGCGAAA GACGTTTTTT GGTTGAGCAG ACCGCTTTGA AGGCGATAGA GTCTCGCGCC AATGCCGGGG CGGTGATTCA AGCCGATGTG ACTAAGATGG CCCTGCGTCT GTCTCGAACG AAGGCGGTCA AGGAGCAGCT CGATGGCGAG ACAAGGCTTG CCCGACTGCG CTTAGCGGCC ATGTGGTCGA GGGAACCTCA CTTCACCCGT GCCCTTGGTA CTCTGGACCT GTCATTGACG CTCCCCACAG CGGCGAGCGT GCTCAACGCT ATCGAAACCG CTCCTCAATA TCTGCAGCTG TTAAGCGTCG AGCGTTTGAT GTACGCCAAG CGCCGTATGG AGGAATCTAA GGCGCAATAT GATGTGACAT TGGGGATGGG AGTTCGAAGT TATGAGGGGT TCGATGACGG TGCCTTGATG TTCAACTTCT CTATGCCCAT TCCTCTCTCT AATCCCAACC AAGGCAATAT ATTGGCCGCT AAAGCCAATG AAGACAGGGC GATGGAGCAG CAAAAATTGG TCCGCGGTCA ACTAAGGCTT TCATTGATGG AGATTCATCA GGTCATGGTC AATAACGCCC GGCAAGCAAG CCGTATCCAA CAGCAAGTTT TGCCTCTGGC ACAACGGTTA CTCGAAGACA CCCAAGGTGC CTATCAAACG GGGCAAACCA ATGTACTGCA GCTGGTCGAT GCCCAATCTG AGCTGTTTGC CATAGAGCGG GAGCTTATCG AAGTCAAAGT GGCTGTCTAT CAACAGAGGC TAGAACTCGA GCGCATTACC GGACAATCAA TGACTGCCAC TGACTCAAAC TTTAGCTCAA ATGCACGTTC AAACATGACG CCGTTTGTGG CACAGGAGAA CAGATAA
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Protein sequence | MKRYQEITLV ACQRALVTVS LCVLALYAGK SVAQSDQGKV NLPWVLEKTL LNNVQLQSFP YELRVSEALT IQAGISPNPE FSVEVENVLG TGERQGVDNA EITLALSQLI ELGGKRQRRV DVAQATERQK LSEYEILRLD ILAEATGRYY QLLRLQALQD WSERRFLVEQ TALKAIESRA NAGAVIQADV TKMALRLSRT KAVKEQLDGE TRLARLRLAA MWSREPHFTR ALGTLDLSLT LPTAASVLNA IETAPQYLQL LSVERLMYAK RRMEESKAQY DVTLGMGVRS YEGFDDGALM FNFSMPIPLS NPNQGNILAA KANEDRAMEQ QKLVRGQLRL SLMEIHQVMV NNARQASRIQ QQVLPLAQRL LEDTQGAYQT GQTNVLQLVD AQSELFAIER ELIEVKVAVY QQRLELERIT GQSMTATDSN FSSNARSNMT PFVAQENR
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