| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3869 |
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| Symbol | |
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| ID | 5609678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4721870 |
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| End bp | 4723168 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934823 |
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| Product | cobalt-zinc-cadmium resistance protein (cation efflux system protein) |
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| Protein accession | YP_001475601 |
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| Protein GI | 157377001 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTTA AATTGAATCA GCTTTCATCA GCATTTATGG CGGCAGCTAT CACTCTATCG
GCCTTGAGCT TTTCAACTCT GCTACCGGGA AATTTAGCCT GGGCCAGTGG CGATCACGGT
CATGGCCATG AAGAGAAGGA GGAGCACGTT CCCGAGGGAC CTCATGGTGG CAGACTCCTG
CACAGTGGTG AGTTTGAGGT TGAGATCACT ATGGTCGAGT CGGGGATACC GCCGGAGATG
CGTGTTTATG CTTACCATAA GGGCGAGAAG TTGGACCCAA GCGAGATAAA ACTCGAGCTT
CTGCTTAATC GCCTCGGCGG CAAAACAGAC AAAATAAGCT TTGTCATTGA AGAAGATTAT
CTGGTGAGTG AGCAGAGCGT CGCCGAGCCT CACTCTTTCG AGGTGGAGGT CCACGCAGGC
TTTAAGGGCG AGTCTTTCGA CTGGCACTAC GACAATTACA CTGGCCGGAC TGAGATTAAC
GATCGGCTAT TGAAACTTTC CGGGATTCAA ACTCAGCAAG CCGGTAGTAA ACAGCTCACC
TTTGTGGATA CTCTGTTTGG GGTCGTCGCC CCTATTGCCG ATAAGCAGTT TAGTGTTAAT
GCGCCTTACG CCGGGGTTAT CGAACGGCTT CATGTCAGCA TAGGTGACTC GGTTGAAAAG
GGACAAATCA TCGCAACCGT GCGCAACTCA AGCACACTGC AAACTTATCA GGTCAAGAGC
CCTGCCAGCG GTCAGGTTAC CGAGCAGTTG TTGAGTCTGG GTGACAACAC CTTTAATCGC
GCCTTAGTAC GTATCAGCGA TCTGTCGAGT GTCTGGATAG ATCTCTCTGC CTTCCCCAAG
AGCATAGATA AGCTTTCTCT GGGTCAGCCC GTGACCATAG GGGATGATCA CAAAGATATA
GATCACAATG CCGAAAATGT TAGCGCTTCA GCCCGCAGCA CCATCAGTTA TATAGCGCCA
ACCATGACAG GCGGTCACAT CGCCCGCGTG CGTGCCGTGA TCGAAAACGA ACATGGACAC
TGGCGACCTG GCATGCACAT TCAGGCCGAT ATTGAGACCC GTACTAAGCG GGTGCCTTTA
GCGGTGCGCG TCGATTCGCT GCAAACCTTT ATGGAAAATC CGGCCGTATT TGTAAAGCAT
GGCAACACCT TCGAGGTGCG TATGCTGAAA CTTGGCGAGA GCGATGGTGC GTATGTCGAA
GTGTTGGCCG GACTGGATAG TGATAGCGAA TATGTCACCG AAAATAGTTA CTTATTAAAA
GCGGACATCA TGAAAAATGC CGCTAAACAC GTGCACTAG
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| Protein sequence | MNFKLNQLSS AFMAAAITLS ALSFSTLLPG NLAWASGDHG HGHEEKEEHV PEGPHGGRLL
HSGEFEVEIT MVESGIPPEM RVYAYHKGEK LDPSEIKLEL LLNRLGGKTD KISFVIEEDY
LVSEQSVAEP HSFEVEVHAG FKGESFDWHY DNYTGRTEIN DRLLKLSGIQ TQQAGSKQLT
FVDTLFGVVA PIADKQFSVN APYAGVIERL HVSIGDSVEK GQIIATVRNS STLQTYQVKS
PASGQVTEQL LSLGDNTFNR ALVRISDLSS VWIDLSAFPK SIDKLSLGQP VTIGDDHKDI
DHNAENVSAS ARSTISYIAP TMTGGHIARV RAVIENEHGH WRPGMHIQAD IETRTKRVPL
AVRVDSLQTF MENPAVFVKH GNTFEVRMLK LGESDGAYVE VLAGLDSDSE YVTENSYLLK
ADIMKNAAKH VH
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