| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3868 |
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| Symbol | |
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| ID | 5609677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4718723 |
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| End bp | 4721857 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640934822 |
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| Product | cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA) |
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| Protein accession | YP_001475600 |
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| Protein GI | 157377000 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATACAA TCATCTCCTT CGCGTTAAGG CGGCGGTTAC TGGTGCTGGC GATGACCCTA
CTCATCGCGC TATTGGGTGT CTACAACACG TTAAAGTTAC CTATCGATGC CGTACCCGAC
ATCACCAATG TACAGGTACA GATAAACACA GCGATTGCTG GCTACTCTCC ACTCGAGTCT
GAGCAGAGAC TCACCTATGT GGTTGAAAAT GCCATGGCGG GGATACCTAA TCTGGATCAT
ACCCGCTCTA TCTCCCGCTA TGGCCTGTCT CAGGTGACAG TGATCTTCGA TGAAGGCACT
GACATCTATT GGGCAAGGCA GCAGATCGCC GAGCGACTTC AGGGGATCCG TGGTGAGTTA
CCTGTGGAGG CCGAACCGGC ACTTGGCCCT GTGAGTAGTG GCCTGGGTGA AGTGTTTACC
TACTCAATTC GCGCCCTCGA TGGGGCATTG AAAGAGGACG GCACCCCCTA TAACGCCGAA
GATCTGCGTA CTATTCAGGA CTGGATCATC CGCCCTCAGC TGGTCAAGGT GCCCGGGGTT
ACCGAGATCA ACAGCCTGGG AGGCTTCGAG CGGGAATATC AGGTCGCGCC GGATCCCGGT
AAGTTACTGG CGTTTAAGGT GACCATCGAT GATGTTATCT CGGCGCTTGA GCGTAACAAC
CGTAATGTGG GTGCAGGTTA CATAGAGAGA AATGGTGAGC AGTGGTTAGT CCGCTCACCG
GGACAACTTA AAGATCTGGA GGAGATCCGC CAAGTCGTTG TGACTAAGCG AGACGACGCG
CCGGTTCGCA TCGGCGATGT GGCCGAGGTG TTCTACGGTA AACAACTCAG AACCGGCGCC
GCGACTCAAG ATGGTGAAGA GACAGTGCTG GGCACCGCCT TTATGCTGTT GGGTGAAAAT
AGCCGCGTCG TCGCTAAAGA GGTGGGTGAC AGGCTAGAAC TGGTTAATGC CAGCCTGCCC
GAGGGCATAG TGGCAGAGGC GGTATATGAC AGAACGGATC TGGTCGACAA GGCTATCGCC
ACCGTGCAGA AAAATCTGTT CGAAGGTGCC GTACTGGTTA TCGTCGTGCT GTTTGCCTTG
CTTGGGAACT TTCGCGCGGC GCTTATCGCA GCCCTGGTTA TTCCGCTCAG TATGCTGTTT
GCCATCACTG GAATGACTGC TAACCGCGTC TCAGGCAATC TGATGAGCCT TGGTGCTATC
GACTTTGGCA TTATCGTCGA TGGTGCGGTT ATCATCGTCG AGAACGCATT GCGTCGACTC
GGTATGGCCC AACATAGCTA CGGCAGGCTT CTCTCATTGG AGGAACGTCT CAAGGTGGTG
TTCGATGCGA CAAAAGAGGT GTTCCGCCCG GCGGTATTTG GTGTCCTGAT AATCATGCTG
GTCTATCTGC CTATCTTTGC ACTCAGTGGT GTCGAAGGTA AGATGTTCCA CCCAATGGCA
TTTACCGTGG TTGCTGCGCT TATCGGTGCA CTTATCCTTT CGGTTACCTT CGTGCCAGCC
GCCATCGCCA TTTTTGTTAA GGGTAAAGTT AACGAGAAAG AAAACTTCCT GATGGTTAAA
GCGCGTAGCA TCTATGAGCC GGTGCTGTTC TTCTCTCTTA AACGCCCTGT CATCATTGTC
GTCACCGCGA TAGCCTTGAT GAGCGTCACC ACCTATCAGC TCAGTCGCTT AGGCTCTGAA
TTTCTGCCTA AACTCGATGA AGGTGATATT GCCATGCACG CCATGCGCAT TACGGGTACA
GGCCTCGAGC AGTCAACCGA GATGCAGAAA AAACTCGAGT TGGTTATCGG TGAGCTTGAT
GAGGTCAAGC ATGTGTTCTC GAAAATTGGT ACTCCCGAGG TGGCGACCGA TCCTATGCCG
CCAAGTGTTG CCGATACCAT CTTGATCATT AAGCCTCGCG ATCAGTGGGC CGATCCGACC
AAGAGTAAAG AGCAGTTTAT CGATGAACTG AGAGAACATG TTGAACAGGT CCCAGGCAAT
AATTATGAGT TTACCCAGCC TATCGAGATG CGCTTCAACG AGTTGATTGC CGGAGTACGT
GCAGATGTTG CCTTGCGAAT TTATGGTGAC GATCTCGATA CCCTTAAAGC TGCAGGCGAC
CGCGCCGAGG CCCTGTTCCA TAAACTCGAT GGCGCCAAAG ATGTTCGTGT CGAGCAGATG
TCTGGTTTAC CTACGCTGTC TATCGAACCT AATCGGGATC ACTTAGCCTT GCTGGGCCTC
ACCATAGTCG ATGTGCAGCA GGCGCTGCAA ACAGCAGTCT CAGGTGTACC TGTTGGTCTC
ATCTATGAGG GAGATCGCCG CTTTAAACTC GTGGTGCGTA TGGCTGATAA TATCAGCCAG
GATCTCAGGG CGCTGGAGAG GCTGCCAATC GCCTTGCCGA CAGAGCTAAA TCCCGATCTC
AGTTATGTCC CCCTTGGCGA GGTGGCCGAT ATTAAGTTCA AGGTGGGGCC AAACCAGATC
AATCGTCAAA GCGGTAAGCG CCATGTGGTG GTGACCGCGA ATGTCGAAGG TCGGGACTTG
GGCTCCTTCA TTAAGGACAC TAAGGCGCTG ATGGGGAGTG AGCTTAAGCT GCCCAGTGGT
TATTGGAGTG AGTACGGTGG CACTTTTGAG CAGTTAGAGT CGGCATCTAA TCGCTTGATG
ATCTTAGTAC CGCTTACTCT GCTACTCATC TTCGGCCTGC TGTATAGCGC CTTTGGCTCA
ATCAGGGACT CGTTGATCAT CTTCAGTGGC GTGCCGCTGG CATTGACCGG TGGCGTCTTG
GCACTGGTGC TTAGAGATAT GCCACTGTCT ATATCGGCGG CGATCGGCTT TATCGCCCTG
TCGGGCATTG CCGTGCTAAA CGGTGTGGTG ATGCTGAGCT TTATTAAGGA GCTCAAGCAG
CAGGGATTCG AGCTGATGGA GGCAATCAAG CAGGGCGCGA GTCAGCGACT TCGTCCGGTA
CTCATGACCG CACTGGTGGC AAGTCTTGGA TTTGTCCCTA TGGCATTGAA CGTCGGCACT
GGTGCCGAGG TACAGCGTCC GCTCGCAACT GTGGTGATTG GCGGCATCGT CTCTTCGACC
TTGCTGACTC TCGTTATCCT GCCCGTGCTC TATCTGCTGG TGTATCGTTT CAGCAATAGA
GAAGGCGTTA ACTAG
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| Protein sequence | MDTIISFALR RRLLVLAMTL LIALLGVYNT LKLPIDAVPD ITNVQVQINT AIAGYSPLES
EQRLTYVVEN AMAGIPNLDH TRSISRYGLS QVTVIFDEGT DIYWARQQIA ERLQGIRGEL
PVEAEPALGP VSSGLGEVFT YSIRALDGAL KEDGTPYNAE DLRTIQDWII RPQLVKVPGV
TEINSLGGFE REYQVAPDPG KLLAFKVTID DVISALERNN RNVGAGYIER NGEQWLVRSP
GQLKDLEEIR QVVVTKRDDA PVRIGDVAEV FYGKQLRTGA ATQDGEETVL GTAFMLLGEN
SRVVAKEVGD RLELVNASLP EGIVAEAVYD RTDLVDKAIA TVQKNLFEGA VLVIVVLFAL
LGNFRAALIA ALVIPLSMLF AITGMTANRV SGNLMSLGAI DFGIIVDGAV IIVENALRRL
GMAQHSYGRL LSLEERLKVV FDATKEVFRP AVFGVLIIML VYLPIFALSG VEGKMFHPMA
FTVVAALIGA LILSVTFVPA AIAIFVKGKV NEKENFLMVK ARSIYEPVLF FSLKRPVIIV
VTAIALMSVT TYQLSRLGSE FLPKLDEGDI AMHAMRITGT GLEQSTEMQK KLELVIGELD
EVKHVFSKIG TPEVATDPMP PSVADTILII KPRDQWADPT KSKEQFIDEL REHVEQVPGN
NYEFTQPIEM RFNELIAGVR ADVALRIYGD DLDTLKAAGD RAEALFHKLD GAKDVRVEQM
SGLPTLSIEP NRDHLALLGL TIVDVQQALQ TAVSGVPVGL IYEGDRRFKL VVRMADNISQ
DLRALERLPI ALPTELNPDL SYVPLGEVAD IKFKVGPNQI NRQSGKRHVV VTANVEGRDL
GSFIKDTKAL MGSELKLPSG YWSEYGGTFE QLESASNRLM ILVPLTLLLI FGLLYSAFGS
IRDSLIIFSG VPLALTGGVL ALVLRDMPLS ISAAIGFIAL SGIAVLNGVV MLSFIKELKQ
QGFELMEAIK QGASQRLRPV LMTALVASLG FVPMALNVGT GAEVQRPLAT VVIGGIVSST
LLTLVILPVL YLLVYRFSNR EGVN
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