| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3861 |
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| Symbol | |
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| ID | 5611414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4710966 |
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| End bp | 4712876 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934815 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001475593 |
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| Protein GI | 157376993 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATATCCA TCAATCAAGC ACAGTTGATC CGCGGCAGTA AAACGCTTCT GGATGAAACC
TCTCTCACTA TTTACCCGGG CCACAAAGTG GGCTTAGTCG GTGCTAACGG CACAGGAAAA
TCATCACTAC TCGCGTTAAT ACTTGGCAAA ATAAGCTTAG ATAAAGGTGA TATTAGTCTG
CCAAGTGGCT GGCAGATAGC GACAGTCGCT CAGGAGACGC CCGCCCTTGA GGTATCGGCA
CTAGAATATG TTATCGATGG TGATGTTGAG TATCGAGAGC TTGAAAGGCA ACTTCACCAA
GCTCAGGCCG ATGATAACGG TAATGCCATT GCCCACCTGC ACGGAAAAAT TGATGCCATT
GGCGGCTATG CTATTCGCTC ACGAGCGGCC AGCCTGTTAG CCGGCCTGGG ATTCAGTGAA
GCGGAGCAAT CCAATCCGGT CAGGAGTTTT TCAGGTGGTT GGCGTATGCG CCTCAATCTG
GCTCAAGCGC TGCTGTGCCG CTCAGATCTC CTGCTCCTCG ATGAGCCAAC CAACCACCTT
GACTTAGATA CCATGTATTG GCTCGAAGGA TGGATCAAAG CCTATCAGGG TACGCTCATC
TTGATCAGCC ACGACAGAGA CTTTATCGAT GGCATCGTCA CTGAGATCAT TCATGTCGAA
AACCATAAGC TCAACTATTA CAAAGGCAAC TATACCGCCT TCGAGCGGAT CCGTGCCGAA
CGTATGGCGC AACAGCAGGT CGCTTTCGAG CGCCAGCAGA AAGAACGGGC TCATATGCAG
TCCTTTGTCG ACCGATTCCG CTACAAGGCC AGTAAAGCAA AACAAGCACA GAGTCGCCTC
AAAGCATTGG AGCGTATGGC AGAACTGTTA CCGTCACAGG CTGACAGTCA ATTTCATATG
GCATTTCTTG AGCCTGAAAC TCTGCCGAAT CCACTCGTCA CCATGGAAAA TGTCTCTGTA
GGTTATGGCG ACACCGAGAT CTTAAAAAGC GTTCAATTGA ACCTGGTTCC CGGTGCGCGT
ATCGGCCTGC TCGGACGTAA CGGCGCGGGT AAATCGACGC TTATTAAATT ACTCTCCGAA
GAACTCTCCC CGATGAAGGG AAAGTACGAG ACGAATCCGG GCCTCAATAT CGGCTATTTC
GCACAGCACC AACTCGAGAG CCTTCGCCTC GATGACACTC CACTTCAGCA CCTGTCACGC
CTGGCCCCGA CGACGCGAGA GCAAGAGTTG AGAAACTTCC TCGGTTGTTA TGGCTTCAAT
GGTGACATGG TGTTATCCCC CGTCCGTCCT TTTTCCGGCG GAGAGAAGGC CAGATTAGTT
TTGGCATTAT TGGTATGGCA ACGCCCTAAC CTTCTACTTC TCGATGAGCC AACCAACCAC
TTGGATCTTG AGATGCGCCA TGCACTGACG ATGGCGTTGC AGTCGTTCGA GGGGGCGATG
ATTATCGTAT CCCACGACAG ACACCTGCTC AGACTCAGTT GTAGCGATTA CTATCTGGTC
GACGGCGGTC AAGTGCGTAG TTTCGATGGT GACCTCGATG ATTACCATCA ATGGCTTCTC
GATGCAGCCA AGTCGGCAAA CAGAGAGGAG GTCAGTGCAG AGGCTAAACC TGCTCAGGAT
AAGAAACTAC AGAAGCGTTT AGAGGCCGAG TTGCGCCAAA AACTATCGCC GATGCGAAAG
GTTCAGCTCA AGCTCGAGAA AGCGCAGCAA AAATCGAGTA CCCGTTTATC TGAACTTGAA
GAGATGCTGG CCGACATGAG TTTGTATGAG GCCGACAATA AGGCTAAATT AACTCAGGTC
TTAAGTGAAC GAACTCAGCT CACTCAAGCG TTAGAGGAGA GTGAGATGGA ATGGTTAGAG
GTTCAGGAGT CTATCGAAGA GATTGAACAA GAGGTTCGTT CAGCACTCTG A
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| Protein sequence | MISINQAQLI RGSKTLLDET SLTIYPGHKV GLVGANGTGK SSLLALILGK ISLDKGDISL
PSGWQIATVA QETPALEVSA LEYVIDGDVE YRELERQLHQ AQADDNGNAI AHLHGKIDAI
GGYAIRSRAA SLLAGLGFSE AEQSNPVRSF SGGWRMRLNL AQALLCRSDL LLLDEPTNHL
DLDTMYWLEG WIKAYQGTLI LISHDRDFID GIVTEIIHVE NHKLNYYKGN YTAFERIRAE
RMAQQQVAFE RQQKERAHMQ SFVDRFRYKA SKAKQAQSRL KALERMAELL PSQADSQFHM
AFLEPETLPN PLVTMENVSV GYGDTEILKS VQLNLVPGAR IGLLGRNGAG KSTLIKLLSE
ELSPMKGKYE TNPGLNIGYF AQHQLESLRL DDTPLQHLSR LAPTTREQEL RNFLGCYGFN
GDMVLSPVRP FSGGEKARLV LALLVWQRPN LLLLDEPTNH LDLEMRHALT MALQSFEGAM
IIVSHDRHLL RLSCSDYYLV DGGQVRSFDG DLDDYHQWLL DAAKSANREE VSAEAKPAQD
KKLQKRLEAE LRQKLSPMRK VQLKLEKAQQ KSSTRLSELE EMLADMSLYE ADNKAKLTQV
LSERTQLTQA LEESEMEWLE VQESIEEIEQ EVRSAL
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