| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3851 |
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| Symbol | |
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| ID | 5611655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4696231 |
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| End bp | 4697772 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934805 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001475583 |
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| Protein GI | 157376983 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00282331 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACGCCC GCCAGAGTCA CTGGCTCCAT GAATTCTGCT GTTTTAAAGC ACCGAGAGAC
CAATCTATGA GTTTTACCTC CCTGGGGTTA TCAGCCCCGA TATTAAAAGC TGTTGCCCAA
AAAGGTTACG ATACTCCTTC ACCTATCCAA GCTCAGGCAA TTCCCGCTGT GTTGGAAGGC
AAGGATGTGA TGGCCGCAGC TCAAACAGGT ACAGGTAAAA CGGCAGGCTT TACTCTGCCA
CTATTAGAGC TATTAACCAG AGGCAATCGT GCTCAAGCTA AACAAGTTCG CGCGCTGGTA
TTAACCCCGA CTCGTGAACT CGCGGCCCAG GTCGCCGAGA GTGTAGAGAC TTATGGTAAA
AACCTGCCTC TACGTTCGGC AGTTGTCTTC GGTGGTGTAG GTATTGGCCC ACAGATATCT
AAGTTAGGCA AAGGCGTCGA TATTCTGGTT GCGACTCCGG GGCGTCTGCT GGATCTATTT
AATCAGCGAG CCCTGAATTT CAATCAACTG GAAGTGTTGA TCCTCGATGA AGCCGACCGC
ATGTTAGATA TGGGCTTTAT TCATGACATC AAGAAAATTC TTAAGGTATT GCCAGCGAAG
CGCCAGAACC TGATGTTCTC GGCAACCTTC TCTGATGATA TCCGTAAACT GGCCAAAGGC
TTAGTGAACA ACCCGGTAGA GATCTCGGTA ACGCCACGTA ACGCTACGGC AAAAACCGTC
GAGCAGTATA TCTATCAGGT CGATCAGAAG CAGAAAACCG CTGCGCTGAT CCATCTGATC
AAACAAAATG ACTGGAAACA GGTATTAGTA TTCAGCCGCA CTAAACATGG TGCAAACCGT
ATCGCTAAGA ACCTCGAAGC TAATGACCTC ACCGCAGCTG CCATCCACGG TAACAAGAGC
CAAGGCGCAC GTACTAAGGC CTTAGCTAAC TTTAAGAGTG GTGAAGTGCG CGTGTTAGTC
GCCACCGATA TTGCCGCCCG AGGTATCGAT ATCGATCAGC TACCTAATGT GGTTAACTTC
GACCTGCCAA ATGTACCCGA GGATTATGTT CATCGTATCG GCCGTACAGG ACGTGCCGGC
GCCGATGGTC AAGCGGTTTC GCTTGTCAGC GGTGATGAAA GTAAGCTGCT CAGAGATATT
GAGCGTCTGA TTAAGCAAAA AATTCCTCGC AAAGAAGTTG AAGGCTTTGT GCCGACTCAA
GTTGTCGCCG AAACCGATCT TAATGAGAGA AAACATGGTC AAAACCGTGG TCCACGCAAT
GCCAACGGCA GAGGCAATGG TCGCTCAAAC TCCGGTTCAA GAAACAATGA CTCTCGTGGC
AATGCTTCAC GTGGCTCATC GCGTAACGAC TCTCGTAGTG AAAGCAGTCA AGGTGGCAGA
GTAGAACATA AAGACGGTCA ACGCAGTGGT GATTCTGCTC GCGGGCATAA GCCCAACGAC
AAGAACTCAA GCCATAGCCG TTCACGCAGA CCTTCGGGTC AATCAACTTC GAGTGCGCCT
GCGTCTAAGC CAAGTTCAAA TAGCAGCATC TGGGGTAAGT AA
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| Protein sequence | MHARQSHWLH EFCCFKAPRD QSMSFTSLGL SAPILKAVAQ KGYDTPSPIQ AQAIPAVLEG
KDVMAAAQTG TGKTAGFTLP LLELLTRGNR AQAKQVRALV LTPTRELAAQ VAESVETYGK
NLPLRSAVVF GGVGIGPQIS KLGKGVDILV ATPGRLLDLF NQRALNFNQL EVLILDEADR
MLDMGFIHDI KKILKVLPAK RQNLMFSATF SDDIRKLAKG LVNNPVEISV TPRNATAKTV
EQYIYQVDQK QKTAALIHLI KQNDWKQVLV FSRTKHGANR IAKNLEANDL TAAAIHGNKS
QGARTKALAN FKSGEVRVLV ATDIAARGID IDQLPNVVNF DLPNVPEDYV HRIGRTGRAG
ADGQAVSLVS GDESKLLRDI ERLIKQKIPR KEVEGFVPTQ VVAETDLNER KHGQNRGPRN
ANGRGNGRSN SGSRNNDSRG NASRGSSRND SRSESSQGGR VEHKDGQRSG DSARGHKPND
KNSSHSRSRR PSGQSTSSAP ASKPSSNSSI WGK
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