| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3848 |
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| Symbol | |
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| ID | 5611691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4691458 |
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| End bp | 4693272 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934802 |
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| Product | cysteine/glutathione ABC transporter membrane/ATP-binding component |
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| Protein accession | YP_001475580 |
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| Protein GI | 157376980 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4987] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components |
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| TIGRFAM ID | [TIGR02868] thiol reductant ABC exporter, CydC subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000150406 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGCGC TGTTTCCTTT TATAAAGTTG TTTAAACATC AGTGGTTGAT GATGTTTACC
GGTTTACTCC TCAGCATTAC TACCCTGATG GCAGGGATAG GTTTACTGTC ACTGTCGGGA
TGGTTTCTCT CTGCCGCCGC GGTTGCGGGT TTAACGGTTG TGACGGCGCA GACGTTTAAC
TATTTCACCC CCGCCGGTGG GGTTCGGTTT CTCTCTATTG CCCGTACGGC AAGTCGGTAT
GGCGAACGTC TGGCGACCCA CGAAGCGACC TTCAGATTGC TGACTCAGCT CAGAAGCTGG
ACCTGGCGTA AGTTACTGCC CTTGAGTGCC AAGAACCTGC AAGGGTTAAG GCAGGGGGAT
CTGCTCAATA GATTAGTCGC GGATATCGAT ACCTTAGATC ATCTCTATCT GAGGCTACTG
ACTCCGATGG CGGCCTCTCT GTTAATGCTG GGAGCCTTAT ATCTTTTTGT TGCCTGGTTC
GATGCTCAGT TAGCCCTGAT ACTGTGCGGG ATCTTATTGG CGGTATGGTT GCTGCTTCCC
TTCATCTTCT ATCGTTTGGG TAGAAAGCCC GGCATAGAGC AACTCGAGGC TAAACGGCAC
TTCAGGGTGC AGTTGCTGGA GTTTATACAG GGACAGGCTG AGATCACTCT GTTCGGCGCC
AGCGATCGAT TCAGAGCCGA GATATCTAAA GCCGAAACAG CCATGTTAAA TAGCCAGTCG
GCGATGGCCA ATGTCACCGC CTTGAGTCAG GCTTGTTTGA TTTTATGCCA CGGCGTGGCT
GTGATCATCA TGCTCTATAT GGCCGCCTCC GGTGTAGGAG AGCATGTGCC TCCCGGACCA
ATGCTCGCCA TGATGGTATT TATGACTATG GCCTGCATCG AGATGCTGAT GCCTATCGCG
GGGGCGTTTC AACACCTCTC TGCTTGCGTG ACAGCGGCTA AGCGGGTCAA TGAGTTAGTG
GAGCAGGAAC CCGACATAGT GTTTAACCCC GATTGCGACA CTAAGGTATC TAAGGGGGAG
TTGCTGCTCA AAGATATCTT CTTCAGTTAT CAGCCTGATA GTACGAATCG AGATGTCGAG
TCTGATCAAC AATCTGAACA TACCGTTCTC AGAGGTATAG ATCTGTCGGT GAAGGCGGGA
GAGAAAGTCG CACTTTTGGG GCAGACGGGT TGTGGTAAAT CCAGCCTCTT GTCGCTTATC
ACGAGAGAGT GGCAACCGAC ATCGGGCAGC GTCAGTGTCG ATGGCCGGGA TATTACCGAG
TTTGGGGAAA CTTCTCTAAG GGAGGGGATC ACCCTTATCA GCCAACGGAT CTATCTGCTG
AGCGGTACAT TAAGGAGTAA CCTCACCTTA GCTCAGAAGC CGACTGAGCC TCTGGCGACG
CGGGCCCAAA GGCGTGAAGC GAAGGCAGTG AATGATGAAA AGTTGATCCG GGTGTTAAAC
AAGGTTGGAT TGACAACATT GACTCAGGGT GAAAAACCAC TCGATACCTG GATAGGTGAG
GGCGGAAGGC AGTTATCAGG TGGCGAACAG CGACGTATCG GTGTCGCCAG AGCCCTGTTA
CGCGATGCGC CCCTGTTACT GCTCGATGAG CCAACTGAAG GCCTGGATAA GCGCACCGAG
CGGGAGATCT TAGCCCTCTT GTTTGAGTTT GCAGCCGATA AGACCCTATT GATGATAAGC
CATCGATTAA CGGCCATGGC GCAGATGGAT CGAATTCATT TGATGGAGCA GGGAACAATT
AGCGCCTCGG GAACCCATGA ATCCCTGTTA GCGACTGATG ACTATTACGC GAGCCTGCAT
CATAAGCTAG GTTAG
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| Protein sequence | MKALFPFIKL FKHQWLMMFT GLLLSITTLM AGIGLLSLSG WFLSAAAVAG LTVVTAQTFN
YFTPAGGVRF LSIARTASRY GERLATHEAT FRLLTQLRSW TWRKLLPLSA KNLQGLRQGD
LLNRLVADID TLDHLYLRLL TPMAASLLML GALYLFVAWF DAQLALILCG ILLAVWLLLP
FIFYRLGRKP GIEQLEAKRH FRVQLLEFIQ GQAEITLFGA SDRFRAEISK AETAMLNSQS
AMANVTALSQ ACLILCHGVA VIIMLYMAAS GVGEHVPPGP MLAMMVFMTM ACIEMLMPIA
GAFQHLSACV TAAKRVNELV EQEPDIVFNP DCDTKVSKGE LLLKDIFFSY QPDSTNRDVE
SDQQSEHTVL RGIDLSVKAG EKVALLGQTG CGKSSLLSLI TREWQPTSGS VSVDGRDITE
FGETSLREGI TLISQRIYLL SGTLRSNLTL AQKPTEPLAT RAQRREAKAV NDEKLIRVLN
KVGLTTLTQG EKPLDTWIGE GGRQLSGGEQ RRIGVARALL RDAPLLLLDE PTEGLDKRTE
REILALLFEF AADKTLLMIS HRLTAMAQMD RIHLMEQGTI SASGTHESLL ATDDYYASLH
HKLG
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