| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3843 |
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| Symbol | |
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| ID | 5611698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4684660 |
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| End bp | 4685340 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934797 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475575 |
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| Protein GI | 157376975 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1392] Phosphate transport regulator (distant homolog of PhoU) |
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| TIGRFAM ID | [TIGR00153] conserved hypothetical protein TIGR00153 |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000724256 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000283379 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCCAGTAA ACTCTATTTT GGGCGTGTTT GCAAAATCGC CAATTAAGCC TCTACAAGAG
CATATAGACA AAGTGCACGA TTGTGCATCG ATACTTATCC CGTTTTTTGA GGCTACTATA
GCCGGAGATT GGGATAAAGC TGTTCAACTA CGTAAGCAGA TAAGCTATAC GGAAAGAGAA
GCGGATTCAC TAAAACGTGA AATACGTCTC ACTCTTCCTG GTGGTCTGTT TATGCCTGTC
GAACGAACCG ATCTTCTGGA GCTTCTGACC CAGCAAGATA AAATCGCTAA CAAGGCAAAA
GATATCTCAG GTCGAATCAT CGGCCGTCAG CTTCTCGTTC CTGAAGCTAT ACAAGCCCCC
TTCACTGCTT ACTTGCAACG CTGCCTCGAT GCAGTATCGC AGGCTAAACA AGCAATCAAC
GAGCTCGATG ACCTGTTAGA AACCGGTTTC CGTGGTCGTG AAGTCGATCT AGTTGCAAAA
ATGATCGCCG AACTCGATAA AATCGAGGAA GATACGGATG ATCTTCAAAT CAAGATCCGT
CGTCAGCTGT TCGCTATCGA AAACGATATG AACCCTATCG ATGTGATGTT CCTCTATAAG
ATAATTGAGT GGGTTGGCGA CTTGGCAGAT CTTGCCGAGC GAGTTGGCTC CCGCTTAGAG
CTGATGCTAG CTCGCGTCTA A
|
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| Protein sequence | MPVNSILGVF AKSPIKPLQE HIDKVHDCAS ILIPFFEATI AGDWDKAVQL RKQISYTERE
ADSLKREIRL TLPGGLFMPV ERTDLLELLT QQDKIANKAK DISGRIIGRQ LLVPEAIQAP
FTAYLQRCLD AVSQAKQAIN ELDDLLETGF RGREVDLVAK MIAELDKIEE DTDDLQIKIR
RQLFAIENDM NPIDVMFLYK IIEWVGDLAD LAERVGSRLE LMLARV
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