| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3830 |
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| Symbol | |
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| ID | 5613014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4669889 |
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| End bp | 4670635 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934784 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001475562 |
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| Protein GI | 157376962 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000366277 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATATGTT TAGCTATCAC AACGCTTATC TTTAATGCGC GGGCCAGCAG CTTGTCTGAG
CTCGAGTATT TAACTGAATC CTACCCGCCA TATAACTATC AGGAAGAGGG AGAGTTAAAA
GGGATTGCGG TGGATCTGCT GCGTGCAGCC TTAGCCAGAG TTGGTGAAGG GCTCCCCAGA
GAGAATATTC AGCTTTTACC TTGGCCCAGA GCCTATAAGA TGGCCTTAGC GGGCCCTGAC
CGGGTACTTT TTTCAACGAC TCGCACCCAG CTTCGTGAAG ACTCATTTCA CTGGGTCGGA
CCTATCGTTG AAACCCGGGT AGTGCTGTTT GCAAGGGCTG AGAGTGAGAT CAATATTCAT
TCGATAGATG AGCTGTCGAA CTACAGCATA GGCGGGATAA AGGACGATAT TGGCGAGCAA
CTCCTGTTAT CTTTTGGAGT GCCAGCGAAA CATATTAAGC GGGCAAATAG TGCATACTCT
CTGCTCAAGA TGCTAAATAA GGGCCGTATT CAACTATGGG CCTATGAAGA GAATGTGGCC
AATTGGAATA TTCATAATGC TGGTTTAGAC CCTAGTTTAT TCAAGTCTGT TTTTACCCTT
CAGGAGAGTG AGCTCTATTT TGCTTTCAGT AAAGATACGG ATCCTGAGCT AGTCAATAAG
CTACAGCTGT CTATCGATGA GATAAAGAGT GAATTTATTG GTGATGGCAA TAATCTATAT
GAACAGATCA TCTCTAAGTA TCGTTAG
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| Protein sequence | MICLAITTLI FNARASSLSE LEYLTESYPP YNYQEEGELK GIAVDLLRAA LARVGEGLPR
ENIQLLPWPR AYKMALAGPD RVLFSTTRTQ LREDSFHWVG PIVETRVVLF ARAESEINIH
SIDELSNYSI GGIKDDIGEQ LLLSFGVPAK HIKRANSAYS LLKMLNKGRI QLWAYEENVA
NWNIHNAGLD PSLFKSVFTL QESELYFAFS KDTDPELVNK LQLSIDEIKS EFIGDGNNLY
EQIISKYR
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