| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3824 |
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| Symbol | |
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| ID | 5613272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4659955 |
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| End bp | 4661364 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640934778 |
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| Product | peptidase M16 domain-containing protein |
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| Protein accession | YP_001475556 |
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| Protein GI | 157376956 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0612] Predicted Zn-dependent peptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000529085 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGGTCA CCTCGCTCAC CACAGCGGCA TTGTTTGTCC CTGTGGTCAC GGCCAATGAA
TTAAATTTGC AACAGATGGC CGCCCCCCTG TATCGCACAG AGAAACAGAT CATCTTTCAT
CGGCTGGATA ATGGCCTTCA GCTCAGACTA CTCCCTTTAG CCGATAACCA GCTTGTTTCT
CTGGCCAGTC AATTCAATGT CGGCTCCAGA GACGAACCTT CGGGACAGAC CGGCTATGCC
CACCTGTTCG AACATATGTT ATTCAAAGGC AGTGAGAATG CGCCCGGGGA TAGCTACGCC
CAAACCATGA GTGCCATTAG CGGGCAATTT AACGCCTCCA CCTTCTTCGA TTTCACCAAC
TACTACCTGA CTATTCCGTC AGAAGCGCTG AAACTCAGCC TCTGGCTGGA GGCCGATAGA
TTTATTCGCC CGGCGCTAAC GGATCAAACC GTCAAGAATC AGCAGGACAC GGTACTCGAG
GAGATGGCCA CCAGCATAGA TAATCAACCT TACGTGCGTA AGGCGATGGA GTTTTTACTG
ACTCAGGCCC GAGACACACC CTACGGACAT GCGGTGATAG GCAGTCGGGA AGACGTTAAG
AATGCAACCA AAGAGGCACT CAAACAATTT CATCATAATC ACTACCGCCC CGATGCCATG
CAGTTGAGTA TCGTTGGTGC ACTGCCGGAA AATACAACCC TGTGGGTGGA GGAGGAATTT
GGCCAATGGC AAAATCCTGA GCAGGCGCTA AAACCGCCCC TAAAGATGCA GTTCGAGAAC
AAGCTGGTAC ACGCTGAGGT CATAGATGAA AGGGGGCCCT GGCCGGCACT GTTGCTCGCC
TGGCATACCG TCGGGCAGAC GCACAGTGAT GCTGCCGCGG TCTCCCTGTT AGAAGCCTAC
CTGTTTCAAA ACCGCAGCAG CTTGATTAAG CAGAGCGGAT TAACCGAACC GGACCAACTG
CTCACCTATT CAATCCCAAT GACGATGGAG CAGATGGGGG TCTCCAACCT GATTATGGTA
CCCAGAGCAA AGACCTCACT GGACCAGCTT GCCGGCAATG TTGAACAGGC GATAGAAACC
TTGGCCACAG ACGGCATATC CGACGAGGAT CTGTCTCAAC TCAAGGCCAA CTGGCTCAAC
AAGCGGTTAC AGCTCATCGA CAGACCTTCA CTACTTGCCA GAGCACTCTC GGCGACCTTA
GCGCAAGATA GCTTAACGCC TCTGACGGGC CCCTGGGAAC GCATCAACGC GGTTAGTCCT
GCGATGCTAC AAGCCGCAGC ACAGACCTAC TTTTCTCAAG GTTATGTCAG GTTGAATCTG
CTGCCACCTT GGTACATTCG CTGGACGAAA ACCTTGCTCG AGTGGTTTCC AACGGGAGTG
AGTGACACTC TGGAGGATCT CGTCTTATGA
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| Protein sequence | MLVTSLTTAA LFVPVVTANE LNLQQMAAPL YRTEKQIIFH RLDNGLQLRL LPLADNQLVS
LASQFNVGSR DEPSGQTGYA HLFEHMLFKG SENAPGDSYA QTMSAISGQF NASTFFDFTN
YYLTIPSEAL KLSLWLEADR FIRPALTDQT VKNQQDTVLE EMATSIDNQP YVRKAMEFLL
TQARDTPYGH AVIGSREDVK NATKEALKQF HHNHYRPDAM QLSIVGALPE NTTLWVEEEF
GQWQNPEQAL KPPLKMQFEN KLVHAEVIDE RGPWPALLLA WHTVGQTHSD AAAVSLLEAY
LFQNRSSLIK QSGLTEPDQL LTYSIPMTME QMGVSNLIMV PRAKTSLDQL AGNVEQAIET
LATDGISDED LSQLKANWLN KRLQLIDRPS LLARALSATL AQDSLTPLTG PWERINAVSP
AMLQAAAQTY FSQGYVRLNL LPPWYIRWTK TLLEWFPTGV SDTLEDLVL
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