| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3823 |
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| Symbol | |
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| ID | 5613283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4658242 |
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| End bp | 4659795 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934777 |
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| Product | anaerobic nitric oxide reductase transcription regulator |
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| Protein accession | YP_001475555 |
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| Protein GI | 157376955 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000172283 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCTTGA GTCAAACAGA GCTAACCCAT ATCGCACTCG ATATCACCTC GGGCCTGTCT
AATCGAGACC GGTTTTCTCG CCTACTCGAT ATCATACGCC AAAACCTCAA CTGTGATGCC
GCAGCTTTGC TCGCCTTCCA GGGCCAGCAG TTTATTCCTC TTGCCATAGA TGGACTCAAT
GCCGATGTGC TGGGACGCCG CTTTCTTGTG GATGAACATC CCAGACTAGA AGCGATTGCC
CGCGCCGGCG ATATCGTCAG GTTCCCCGCC GATAGCGATC TTGCGGATCC CTATGATGGC
TTGATCCCAA ATCAGGGAGA TGAGCTTAAG GTTCATGCCT GCATCGGTCT GCCTCTCTAT
GCCGATGAGC GTTTAATCGG TGCCATCACT ATCGACGGCT TCGATCCCGA CCAGTTTCAG
AAGTTCACCA ATAACGAACT GAGAAGCCTC AGTGCAATTG CCGCAGTCTC ACTGAGCAAC
GCACTAATGA TAGACAGGCT CGAAAAAGCG GCGTTTCAGT CACAAGACTC TGGCACGGCA
ATGAGTACCG ATATCACGAC CGATAACGAT GTAGAGATGA TAGGCCAGTC TCAGAATATG
CAGTCACTCA ATAATGAGAT TAACGTCGTC GCCTCGACCG ATCTTAATGT ACTGATCTTA
GGTGAAACAG GAACGGGTAA AGAACTTATC GCCAAGGCGG TACATCAGGG TTCGGAACGT
AAAAAGTCCC CTCTGGTCTA CCTCAACTGC GCCGCACTGC CAGAGTCTGT CGCCGAGAGT
GAGCTCTTTG GTCATGTAAA AGGGGCTTTT ACCGGCGCTA TCAGTAATCG CAGCGGGAAA
TTTGAGTTGG CCGACAAGGG CACCCTGTTC CTGGATGAAA TTGGTGAGCT GCCCCTGACC
TTGCAGGCTA AACTGCTCAG GGTCCTTCAG TATGGTGATA TTCAGAAAAT TGGCGATGAT
CGCAGCCGCA AGGTCGATGT AAGAATTATT GCCGCCACCA ATAAAGATCT TAAACAGGAG
ATCCTGGCGG GACGCTTTCG TGCCGATCTC TACCACAGAC TCAGTGTTTT TCCGCTGATG
GTGCCACCGC TGCGTGAACG AGACGATGAT ATTACTCTCC TGTGTGGATA CTTTGTCGAG
CGATGCAGGC AAAAACTAGG CATAAAAAAC TTAAGCCTCA ATCCAACAAG CCTGAGCCTT
TTGAAACAAT ATGATTGGCC GGGAAATATT CGGGAACTGG AACACGCACT CCACCGTGCG
GCCGTATTGG CGAAGTCACA GGCGGTCAAT GATCTGCCCC AAATCCTTCC TCAACACTTC
GATATACCGG GACAGCCTCA AAAGGATAAG GTCCAACTCC CCGGCGAGAT TTCGAGCCCT
TTTCAAAGCT CATTCACGGG CAGTCTGAAG GATGCCACCG ATGAGTTTCA GGCGCAATAT
ATCCGACATG CATTGGCCGA AAACCAGACT CAATGGGCGG CAACGGCACG TCAGCTCAAG
GTCGACTCAG GCAATTTGCA TCGATTAGCA AAACGGCTGG GGCTCAAGAA GTAG
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| Protein sequence | MALSQTELTH IALDITSGLS NRDRFSRLLD IIRQNLNCDA AALLAFQGQQ FIPLAIDGLN
ADVLGRRFLV DEHPRLEAIA RAGDIVRFPA DSDLADPYDG LIPNQGDELK VHACIGLPLY
ADERLIGAIT IDGFDPDQFQ KFTNNELRSL SAIAAVSLSN ALMIDRLEKA AFQSQDSGTA
MSTDITTDND VEMIGQSQNM QSLNNEINVV ASTDLNVLIL GETGTGKELI AKAVHQGSER
KKSPLVYLNC AALPESVAES ELFGHVKGAF TGAISNRSGK FELADKGTLF LDEIGELPLT
LQAKLLRVLQ YGDIQKIGDD RSRKVDVRII AATNKDLKQE ILAGRFRADL YHRLSVFPLM
VPPLRERDDD ITLLCGYFVE RCRQKLGIKN LSLNPTSLSL LKQYDWPGNI RELEHALHRA
AVLAKSQAVN DLPQILPQHF DIPGQPQKDK VQLPGEISSP FQSSFTGSLK DATDEFQAQY
IRHALAENQT QWAATARQLK VDSGNLHRLA KRLGLKK
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