| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3822 |
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| Symbol | |
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| ID | 5613282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4655751 |
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| End bp | 4658036 |
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| Gene Length | 2286 bp |
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| Protein Length | 761 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640934776 |
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| Product | putative nitric oxide reductase (subunit B) transmembrane protein |
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| Protein accession | YP_001475554 |
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| Protein GI | 157376954 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3256] Nitric oxide reductase large subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0625212 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000200151 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCAAAC TAAAATTAAC CGCAATCGCA CTCATCGCCG TGCTAATTGC TTCATTCACT
GTACTACTGA GTATAGGCAG TGATATTTAT CGAGAGAAAC CCCCTATCCC AACGGCATTT
GTGGCCACCG ATGGTCAAAC ACTCTTCAGT AAAGATGATG TCGAGCAGGG ACAGCTGGTC
TGGCGATCTA TGGGAGGCCA CCAGCTAGGT TCTATTTGGG GTCATGGCTC ATACGTCGCT
CCCGACTGGA CCGCAGATTG GCTGCATCGT GAGGCGAGAG CATGGCTTAA CATCACTTCG
CAGGAACGTT TCAAGCAAGA TTTTGACTCC CTGAGTAGCG AAAAGCAGGC GGGATTAGAG
CAGCTATTGC GTGAAGATAT TCGTCACAAC ACGGTTATCA TCAATACCGA CGATACGACT
CAGGTGACCC TATCCAGGAC TCGTATTCTG GCCATCGAGG AGATAAGCCA GCACTACCTT
TCACTCTTTG GTGACGATCC AAAGCTCTAT ACGCTCAGAG AGCAGTACGC CATGAAAGAG
GGCACAGTTC CTAGTTTAGC GCGTCGCGAA CAGCTTAATG CCTTCCTCTT CTGGGGTGCT
TGGGCGGCGA TCACCGAACG TCCCGGCCTG GATTACACCT ACACCAATAA CTGGCCGTTC
GATCCTCAAC TGGGTAACAC GCCAACCTCA AGCAATATCG TCTGGTCTAT CTTGAGTATC
GTCACCCTGA TCGCGGGTAT TGGTGGACTC GTTTGGTACC ACGCCAGTGG TAAGCATGAA
CCTCTCCCAG AGCCTACCGC TCAGGATCCT CTGTTCTTCA AGAAACCCAC CCCTTCACAA
AAAGCGGTAG GTAAGTACTT CGTTACGGCC ATTGGCCTCT TCCTGCTACA GATATTTCTC
GGGGGCATCA CGGCTCACTA TGCGGTTGAG GGGCAGGAGT TTTATGGCTT GCCACTCGCC
GAAATTCTCC CCTATTCGGT CACGCGAACC TGGCACACCC AGCTGGCAGT ATTCTGGATT
GCGACCACCT GGTTAGGCAC AGGCCTGTAT ATCGCTTCGG CCCTCTCCGG CCACGAGCCA
AAGTACCAAC GCCTGGGCGT CAACGTACTC TGGGCTGCGC TGGTTGTCGT GGTTCTGGGA
TCTATGGCTG GCGAGTGGGC CGGTGTTCAG CAATACTTCG ATCTGGACAT GAACTTCCTG
TTCGGTCACC AAGGTTACGA ATATATCGAT CTCGGCAGGG TTTGGCAGGT GCTGCTGCTC
GGTGGGCTAT TGATCTGGCT TGGGCTCGTG ACGGCAGCAA TTCGCCCGGC ACTTAAGAAC
CAAGGTGAGA TGAGCCCTGT TATCTGGGTC TTGTACTCCT CTTGTATCGC TATCGGCCTG
TTCTACGGTG CCGGCCTGTT CATGGGCAAG CATACCAACC TGGCGATTGC CGAATACTGG
CGCTGGTGGG TGGTTCACCT TTGGGTCGAA GGCTTCTTCG AGACCTTCGC CACTTCGGTT
ATTGCACTCA TGTTAGTTCG CCTCGGGCTT ATCCGTACCC GAAGCGCCAA TGCTGCGGTA
CTCTTTACCA CCTTGATCTT CCTCACTGGC GGGTTAATCG GTACCTTGCA TCACCTCTAC
TTTACCGGTG CCCCCACCTC TGTGGTCGCC TGGGGCGCTA TCTTCTCAGC GTTAGAGGTC
GTGCCACTGG CTATCATAGG ATATGAGGCG GTAGAGAGTT ATCGTATGCG TCAAGCCGCC
CCATGGATGA TCCGCTACAG ATGGGCCATC ATGTTCTTCG TGGCGACGGC ATTCTGGAAC
TTAGTCGGGG CGGGTGTCCT TGGCTTCCTG ATCAACCCAC CGATTGCTCT CTACTTCATC
CAAGGCCTGA ATACCACTGC CACCCATGCT CACGCTGCAT TTATGGGCGT CTACGGTATG
TTAGGCATCG GCTTGATGCT GTTCTGTACA CGAGGCTTGA CGGGTCAAAT GCAGTGGAAT
GAAAAACTAC TCAAGGGCGC GTTCTGGAGC CTGAATATCG GCTTAGCTGG CATGGTATTC
ATGTCACTGT TACCTGTCGG TATCACGCAG TTCTTCGCCG TTATCGAAAA TGGCTACTGG
TTTGCCCGTT CACCCGAGGT GATCCACAGC CCACTCGTCG AAACTCTGGT CTGGATGCGC
GTTCCCGGTG ATGTGGTTTT CGGTATCGGT GGTCTGTTTA TGGGCCTGTT CTTCTTCGAC
ATCATTAAGA AGGCCATAGG TACCAAAACA CAGACTGTAG AGGAGGGTAT CTCAACAGAG
GCTTAA
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| Protein sequence | MSKLKLTAIA LIAVLIASFT VLLSIGSDIY REKPPIPTAF VATDGQTLFS KDDVEQGQLV
WRSMGGHQLG SIWGHGSYVA PDWTADWLHR EARAWLNITS QERFKQDFDS LSSEKQAGLE
QLLREDIRHN TVIINTDDTT QVTLSRTRIL AIEEISQHYL SLFGDDPKLY TLREQYAMKE
GTVPSLARRE QLNAFLFWGA WAAITERPGL DYTYTNNWPF DPQLGNTPTS SNIVWSILSI
VTLIAGIGGL VWYHASGKHE PLPEPTAQDP LFFKKPTPSQ KAVGKYFVTA IGLFLLQIFL
GGITAHYAVE GQEFYGLPLA EILPYSVTRT WHTQLAVFWI ATTWLGTGLY IASALSGHEP
KYQRLGVNVL WAALVVVVLG SMAGEWAGVQ QYFDLDMNFL FGHQGYEYID LGRVWQVLLL
GGLLIWLGLV TAAIRPALKN QGEMSPVIWV LYSSCIAIGL FYGAGLFMGK HTNLAIAEYW
RWWVVHLWVE GFFETFATSV IALMLVRLGL IRTRSANAAV LFTTLIFLTG GLIGTLHHLY
FTGAPTSVVA WGAIFSALEV VPLAIIGYEA VESYRMRQAA PWMIRYRWAI MFFVATAFWN
LVGAGVLGFL INPPIALYFI QGLNTTATHA HAAFMGVYGM LGIGLMLFCT RGLTGQMQWN
EKLLKGAFWS LNIGLAGMVF MSLLPVGITQ FFAVIENGYW FARSPEVIHS PLVETLVWMR
VPGDVVFGIG GLFMGLFFFD IIKKAIGTKT QTVEEGISTE A
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