Gene Ssed_3817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3817 
Symbol 
ID5613397 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4649891 
End bp4651189 
Gene Length1299 bp 
Protein Length432 aa 
Translation table11 
GC content51% 
IMG OID640934771 
Producthypothetical protein 
Protein accessionYP_001475549 
Protein GI157376949 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.335226 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000533932 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAATTAA AAAACAGGTC AAATATATCT AAGGCGCTAG CGATTGCCAG CTGTAGCTTG 
CTTGGTCATA GCTCCCAGGT TAATGCCGGT GACGAGAAAC CGGATGACTG GAAAGTCGAT
GCCGCCATCA TGTACTACGG TGAGGAGGGC AGGGTTCAAG CCCTGGAGGC TATCGGTAAT
GTGCAGAAGG CGTTTGGCGA TGAGTCTCTG TTGGACATGA AGTTGGTGGT GGACAGTTTG
ACCGGGGCAT CGGCGTCCGG TGCCGTCGCC CAGTCACAGA GCCAAACATT TACCCGTCCC
TCCGGTGATG GCGAATATGA AACGGCTCCG GGTGAAACAC CCCTCGATGA TACCTTCAAG
GACACCCGGG CGCAGGTAAG CGCCAACTGG GCGGAGATCC TCTCTCCGGT ATGGAAAACC
AATGTGGGGT TGAACGCCTC TAAAGAGTTT GATTACTTTT CTCTGGGTTT CAATGCAGGG
GGGGAACGCA GCTTCAATAA AGATAATACG ACACTGGCGC TGTCGGGGGC CTATACATTT
GATAACGTCG ATCCGGTCGG TGGCAGACCC GTGGCATTCT CCTCTATGGC ACTTAGAGGA
GATTATGACA CCGAAGAGGA GTATAGAGCG GCTTTCGATA AGACTCGCAT GGAGGGCTCA
CAGGACAAAA AAACCATGGA TATGATGCTG AGTGTCACTC AGGTACTGAG CCGCAGGTGG
CTGTTTCAGG CAAACTACGG CCTCTCCAGT GTATCGGGCT ATATGACCGA TCCCTACAAA
ATCTTGAGTC AGGTCGATGA TACCGGTATG ACTCAGCGTT ACCTATATGA GAGCCGTCCG
GATTCTCGTC TCAAACACAG CTTCTATATG ATGACAAAAG GGGCTCTGGA TGCGGGCGTG
GTAGATTTCT CCTACCGTTA TAGTACCGAT GATTGGGACC TGAACTCTCA TACTCTGGAG
ACCCATTATC GCTACTATTT CAGTGGGCGC CTCTATGGGC AGCTACATCT GAGATACTAC
CGGCAACAAG CCGCCAATTT TTATCGCCCC TTCCTGATGG CGGGCGACAC CTTACCCGAA
TATGCCAGTG CCGATTATCG TATTGGTGAT ATGACCACTT ATACTCTGGG GCTCAAGTTT
GGGCAGCGTC TTTCCGGCGG TCATGAGATG AGCTATCGGC TGGAGTATTA TCAACAAAAC
CCTGAGAATA ATGACACCGA GTTAGTCGGA CAGTTGCAGG ATCACGATCT GTTTCCCGAA
GTGAAGGCGG TTATTGCACA GGTGAGTTAC TCTTTTTAA
 
Protein sequence
MQLKNRSNIS KALAIASCSL LGHSSQVNAG DEKPDDWKVD AAIMYYGEEG RVQALEAIGN 
VQKAFGDESL LDMKLVVDSL TGASASGAVA QSQSQTFTRP SGDGEYETAP GETPLDDTFK
DTRAQVSANW AEILSPVWKT NVGLNASKEF DYFSLGFNAG GERSFNKDNT TLALSGAYTF
DNVDPVGGRP VAFSSMALRG DYDTEEEYRA AFDKTRMEGS QDKKTMDMML SVTQVLSRRW
LFQANYGLSS VSGYMTDPYK ILSQVDDTGM TQRYLYESRP DSRLKHSFYM MTKGALDAGV
VDFSYRYSTD DWDLNSHTLE THYRYYFSGR LYGQLHLRYY RQQAANFYRP FLMAGDTLPE
YASADYRIGD MTTYTLGLKF GQRLSGGHEM SYRLEYYQQN PENNDTELVG QLQDHDLFPE
VKAVIAQVSY SF