| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3813 |
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| Symbol | |
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| ID | 5613326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4647077 |
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| End bp | 4648003 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934767 |
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| Product | lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase |
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| Protein accession | YP_001475545 |
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| Protein GI | 157376945 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1560] Lauroyl/myristoyl acyltransferase |
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| TIGRFAM ID | [TIGR02207] lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00031853 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGTAGAGA AAGCCCAATT TTCAGCGCAT TTATATCACC CCAAATACTG GCTGCTTTGG
TTCGGTGTCG CTTTGATGCG CCTCACTCAA CTCCTGCCCC TTCAGATACA GATGAAGCTG
GGCGCCATGA TAGGCAGATT GGCTAAAACC CTTATGGGCA GTCGGGTCAA TACGGCTAAG
CGAAATCTGG AACTTTGCTT TCCAAAGATG ACTGCCGAAG AGCAACAGGT CTTACTCAAG
CGTAACTTCG AAGAGACAGG TAAGGCTATT TTCGACACCA TCAATGCCTG GTGGTGGTCA
GATGCAAAAA TACAACAGCA TATGACCATC AAGGGTCAGG AGCATGTGGA GCAAACTCTC
AATGACGGCC ACGGCGTAAT TCTGTTTGCA GTTCACTGCC TGCCACTGGA GATGGGAGCC
AGAATCTTCG GTCAGTTCCA GCCCGGTGTC GGCGTATACC GCCCACACGA TAATCCCGTG
ATGGAGTACC TGCAGGTTAA GGGGCGTCTT CGTTCGAATA AAGCCTTAGT TCCCAAGCGA
GATCTTCGAA AAATGGTACG TTGCCTGCGT AACCCCGATG TGATCTGGTA TACCGCCGAT
CAAGACTTCG GACGCTCCAG CGCCACCTTT ATCCCCTTCT TCGCCATGCC TGAGGCCGCG
ACCATCACAG GTGCAACGAC CCTGGCGCGT CTGGGCAAAG CCAAGGTACT GCCTTTTAGC
GTCGAGCGAA ATGCCGATGA TAAGGGTTAC ACCATAGAGA TACTCCCGCC ACTGGATAAC
TTCCCCGGCG AAGATGAGAT AGCCGATGCC AAGCGTGGCA ACGGGATCAT CGAACAGATA
ATCGACAAGA ATCGCGCCCA ATATATGTGG CTGCACCGCA GGTTTAAGAC TCGTCCGAAT
AAGGACGACC CATCGGTGTA TAAGTAG
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| Protein sequence | MVEKAQFSAH LYHPKYWLLW FGVALMRLTQ LLPLQIQMKL GAMIGRLAKT LMGSRVNTAK
RNLELCFPKM TAEEQQVLLK RNFEETGKAI FDTINAWWWS DAKIQQHMTI KGQEHVEQTL
NDGHGVILFA VHCLPLEMGA RIFGQFQPGV GVYRPHDNPV MEYLQVKGRL RSNKALVPKR
DLRKMVRCLR NPDVIWYTAD QDFGRSSATF IPFFAMPEAA TITGATTLAR LGKAKVLPFS
VERNADDKGY TIEILPPLDN FPGEDEIADA KRGNGIIEQI IDKNRAQYMW LHRRFKTRPN
KDDPSVYK
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